| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0397 |
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| Symbol | |
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| ID | 3760914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 447516 |
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| End bp | 449183 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637785108 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_390667 |
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| Protein GI | 78484742 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATT TATTTAAGAG CTCTTTTAAC GGGCCATCTT GGAACCTAAT GACTTCATCC
AGCAACTTGA CTCAAAAAAC ATTTTGGCTC AATTTTATAG GCATTTACCT GTTATTGCTG
GCCGTACTTG GCTTTCTGAT TTCAAGCTGG TACAGCTTAA AATCCACACA AGAACTTGAA
CTCATCAAAC TGAATCAATC CCAAGTCGTG TCCCGTGCAA AAAGTATTAT GCTTGAAGAG
TACGAAAGCA TGTTGTCGGA TTTATTGACC TTAGCGTCTC TTCCATTGCA CTCACATTCC
CGAAATACCA CGTCGGAACA CCGCTTTAAA CAAGATTTGG CCTCCACCTA TTTGGTTCTA
TCACAGACCC GCGGGCGCTA CGATCAAATT CGCTACATTG ACAAAGAAGG CATGGAAAAA
GTTCGGGTGG ACTATAACGA CGGCACCCCT AGCCTCACAC CTCAAAGTCA GCTGCAAAAT
AAAAAAACGC GTTACTATTT TCAAGACATT AATCAACTCT CACCGAAAGA AATCTACATT
TCACGTTTTG ACCTTAATAT CGAACAAGGC AAGATCGAGC AACCTTACAA GCCGATTATT
CGAATGGGCA AGGCCATTTT TAATGAACGT GGCCAGCGCC AAGGGATATT ATTACTGAAC
TATCTTGGTA AGGTTTTGCT CTCCAAGCTT AACCGATTGC GCCAATCAGA AGGGTCACAA
CTGATGATTG TCGATCAAAT GGGATACTGG CTAAAACACC CCAACCCGGA TAAAGAATGG
GGCTTCATGT TTCAGGATAA ACAAAACCAA ACCTTCGCGG CCGCGCACCC TAAGCTATGG
CAAACCATGC TGACTCAACA CTCTGGACAG ATCACAACGC CACAAGGGTT ATACTCGTTT
GAATCCGTCT TTCCATTAAA GTCCGAATCC ATTTCCGAAT TGGGGCATTA CCAACTTCGG
GACAAACAAT TTTCAACCCA AGCCGATCTT AAAAATTACC AATGGCTATT GATTTCCTAT
ACACCAAGAA CATACTTTAC TCAAAAGCTA AAAAACCAAC TGCAAAACAT GGCCTCCCTT
TTGATCGGCA TCATCGTCTT AATGGGCGGA ATTGCCTTTC TGTTTGCATC GAACCGACAC
CAAAAACAAT TACTGCAACA AAAGGCTCGC TATTTGGCTT ACCATGATTC TTTAACGGGG
CTTTATAACC GCTATGCACT GACGCAAACA GAAGGCCAAC ATAACCTGTT GGCCAATAAA
TCAGACAACG ACAGCTACTC TGTGTTCTTT CTTGATCTGG ATGGCTTTAA ACCAATCAAT
GACACTTACG GACACCAAGT GGGCGATCAA GTGCTGCAAA CCATCGCCAG TCGACTTAAA
AACACCGTTC GAAAAGAAGA CATTGTGGTG CGTGTCGGTG GCGATGAGTT CGCCATCATC
ACCTACCATA CCGTCGACCG TGTCGCCATC CAGATTTTCG GTGACCGTCT TATCAAAGCC
ATCGAAAAAC CGATTCAACT GGATGACAAA ACGCTTCACC TAGGTACCAG TATTGGCGTC
GCTTCTTACC CGCAGAATGG TGATACCTTA AACCAACTGA TCGATTTAGC TGACGCTGCA
ATGTACAAAG CCAAAAAATC CGGCAAAGGC AAACTTTGTT TTGCTTAA
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| Protein sequence | MNDLFKSSFN GPSWNLMTSS SNLTQKTFWL NFIGIYLLLL AVLGFLISSW YSLKSTQELE
LIKLNQSQVV SRAKSIMLEE YESMLSDLLT LASLPLHSHS RNTTSEHRFK QDLASTYLVL
SQTRGRYDQI RYIDKEGMEK VRVDYNDGTP SLTPQSQLQN KKTRYYFQDI NQLSPKEIYI
SRFDLNIEQG KIEQPYKPII RMGKAIFNER GQRQGILLLN YLGKVLLSKL NRLRQSEGSQ
LMIVDQMGYW LKHPNPDKEW GFMFQDKQNQ TFAAAHPKLW QTMLTQHSGQ ITTPQGLYSF
ESVFPLKSES ISELGHYQLR DKQFSTQADL KNYQWLLISY TPRTYFTQKL KNQLQNMASL
LIGIIVLMGG IAFLFASNRH QKQLLQQKAR YLAYHDSLTG LYNRYALTQT EGQHNLLANK
SDNDSYSVFF LDLDGFKPIN DTYGHQVGDQ VLQTIASRLK NTVRKEDIVV RVGGDEFAII
TYHTVDRVAI QIFGDRLIKA IEKPIQLDDK TLHLGTSIGV ASYPQNGDTL NQLIDLADAA
MYKAKKSGKG KLCFA
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