| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0391 |
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| Symbol | |
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| ID | 3760906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 440967 |
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| End bp | 442787 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637785100 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_390661 |
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| Protein GI | 78484736 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0000447314 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGAAAG ATTTGATTCA GAAAAAAAGA CAATGGCCGG CTATTTTAGT CATCTGTATA
GGGGCGTTTT TAAATTTAAC CGCCTGTAGT CAGTTGAGTG AAAAGCCGGC AGAACCAACC
TTATCGCCGG TTTCTAAAAC CGTTGAAGAC TCAGAAAAGA CCTCTGTTGA AAACCAAGTC
GACAGCCCTT CTGCAAAAAT GTCGCCGCAA ACCATGTATC AAATATTATT AGCGGAAATG
TTGGTACAAA AAGGAAACAA CAGTGCGGCT TTTGGTGTGT TGTATCCCGT TGCATCTGAA
ACACGCGACC CCAAATTAGC TGAACGCGTA TTTCAGCTGT CCATGTCGAC TTACGATTTA
ACGGCCATCA AAGAATCGGC CAAACTGTGG CGAGATGTGT CCCCTGATGA AGCCGTTGCT
TGGAAAGCCT CCTATTTAAT GTCTGTTAGA GAAGGCAATA TTGAACAAGG CATTGATTTT
TGGAAACGTT ACCAAGCGCT GTCAACAAAC ACGTTGGCGC AAGACTTAAT CGCCGCGTCC
ATTCGTGTGC CGCAAACGGC ACCCGCCGAA TATGGCTTGC CTTTTTTAAG CGCCGTGCAT
CAGCTTTACC CGAACGAACC GGCTGGCATT TATGGTTTGG GCGCTGCTGC CGAAACTTAC
GGTGATTATC AAACCGCCAT TCAATATTTA GAACAGGCGG CGCCTTTATA CCAAACGCAA
GCGGACAAAG ATGACGAAGC CTTTGTGGCG GCTAAAGTCT ATCGTGAAAC CAATCGCTTG
CTCGCTAACG CGTATTTGAA ATCTAATCAG GCCGCTTTAG GGCTTAAGCG TTTGGAAGAC
TATGTTGATG AGCATGATGA CGACTGGTTG ATGCAAGAAC GGTATGCGCG TTTGGAAGTG
AAGGCCGGCT TTTACCAACG AGCGGAAAAA CGTTATTTAC GTATTATTGA AAATGAACCT
AAGGCTTATA CTTCAAAACT TTCGGTGGCG CTGTTACGTT TAGAGCGTGA TGAGTTTGCC
AGTGCGGAAA AGCTTTTGGT GGAGTTGCAA GATGTACCTC AGTATCGCTC CACCGCGCTG
TACTATTTAG GGGTGTCTGC TCAAGAGCAA AATCATTTAA AGCAAGCGAA AGGCTATTAT
GGGTTGATTC AATCGCAGGA TTATTTAGTG GATGCCCAAT TGCACATCGC TGAAATCGAC
TTTTCCACGA TAGGATTGCA AAAAACGATC CAGAATTTGA ATGCGGTCAA AGCCTCTTCT
CCGGAAGACC AGATAAAGCT GTACCGAGGA AAAGCGGTTT TCTATAACTT GTCCGGCGAA
AAAGAAAAAG CGATTGAAGA ATATAGCCAA GCGCTGGCGA TCGATCAAAA TCAGGTTGAA
CTCTATTTGA TGCAGGCGAT GTTGTTTTAT GACTTGAAGC AATTTGATCG TTACGAAACC
AACTTAAAGA AAGCCTTGTC GATTAATCCG AATGATGTGG ACGTTTTGAA CGCATTAGGC
TACTTCTATG CCGAGCAAAA TCGAGAATTG GACCAGGCCA CCGAATTGTT GGATAAAGCC
CTGTCACTCG CACCGGATCG TTATTATGTT TTGGACAGTC GAGGCTGGTT GGCGTATCAA
AAAGGGCAGT ACAAAGAAGC AGAGTCGTAT TTGAAGCGTG CTTTAGACAT TCAGCTCGAT
GATGAAGTGT TGATTCACTT GATTCACACA CAATGGCGTT TGAATAAAAA GACGGCCGCC
ACTCGGTTGT GGAAAAAATA TCACTCAAAG TTTCCAGATA ACCAACGTCT GCAAAGAATT
TTGTTAGACT TGTCTTCGTG A
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| Protein sequence | MGKDLIQKKR QWPAILVICI GAFLNLTACS QLSEKPAEPT LSPVSKTVED SEKTSVENQV
DSPSAKMSPQ TMYQILLAEM LVQKGNNSAA FGVLYPVASE TRDPKLAERV FQLSMSTYDL
TAIKESAKLW RDVSPDEAVA WKASYLMSVR EGNIEQGIDF WKRYQALSTN TLAQDLIAAS
IRVPQTAPAE YGLPFLSAVH QLYPNEPAGI YGLGAAAETY GDYQTAIQYL EQAAPLYQTQ
ADKDDEAFVA AKVYRETNRL LANAYLKSNQ AALGLKRLED YVDEHDDDWL MQERYARLEV
KAGFYQRAEK RYLRIIENEP KAYTSKLSVA LLRLERDEFA SAEKLLVELQ DVPQYRSTAL
YYLGVSAQEQ NHLKQAKGYY GLIQSQDYLV DAQLHIAEID FSTIGLQKTI QNLNAVKASS
PEDQIKLYRG KAVFYNLSGE KEKAIEEYSQ ALAIDQNQVE LYLMQAMLFY DLKQFDRYET
NLKKALSINP NDVDVLNALG YFYAEQNREL DQATELLDKA LSLAPDRYYV LDSRGWLAYQ
KGQYKEAESY LKRALDIQLD DEVLIHLIHT QWRLNKKTAA TRLWKKYHSK FPDNQRLQRI
LLDLSS
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