Gene Tcr_0389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0389 
Symbol 
ID3760904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp438424 
End bp439515 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content49% 
IMG OID637785098 
Productpeptide chain release factor 1 
Protein accessionYP_390659 
Protein GI78484734 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.802059 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGAAT CCATTCGCAG CAAACTTGAA AACCTGGTCG AACGACTCGA TGAAGTGAAC 
CATCTTATTT CCGACCCGGA AATCATCAAC AACCAGAACA AGTTTCGTAA CCTGACCAAA 
GAGCACTCTC AATTAACCCC GGTGGTTGAA ACCTTTAACC AATTTATTCA AAACCAAGGC 
GACTTGCAGG AAGCTAAAGA CATGATTAAA TCAGGCGACC CGGATTTAAA AGAAATGGGT 
CAGGAAGAAT TGCCGGAGCT TGAAAAGCAA CAAGCGACCT TGGAAGCGGA ATTGCAAAAA 
ATGCTGCTGC CGAAAGATCC GAACGATGAT GCTAATATCT TCTTAGAGAT TCGCGCCGGA 
ACAGGTGGGG ATGAAGCGGC GATCTTTGCC GGTGATCTTT TTCGAATGTA TAGCCGCTAT 
GCTGAAACAA TGCGCTGGCA GGTTGAAGTC ATCAACTCTC AAGAAGGTGA GCACGGAGGC 
TACAAAGAAA TTATTGCTCG TATCATCGGA GACGGCGCTT ATTCTCGTTT GAAGTTTGAG 
TCCGGTGCTC ATCGAGTGCA ACGGGTTCCA GCCACTGAAA CGCAAGGACG CGTGCACACC 
TCTGCCGCAA CGGTGGTCAT CATGCCGGAA GCTCAGGATG TGGAACAAAT CGATTTAAAC 
CCTGCGGATT TAAAAGTCGA TACCTTCCGT GCATCCGGTG CCGGTGGGCA GCATGTTAAC 
AAAACCGATT CCGCCATTCG AATCACCCAT ATTCCAACGG GAACCGTCGT GGAATGTCAG 
GACGAGCGCT CTCAGCATAA AAACCGTGCT CGAGCCATGT CATTACTGGC TTCGCGCATC 
ATGGACGAGC GTCAGCGCAT CCATGACCAG GAAATTGCAC AAGAACGTAA AAGTCTGGTT 
GGCAGTGGTG ACCGCTCCGA ACGCATTCGA ACCTACAACT ATCCGCAAGG CCGTGTTACC 
GATCACCGCA TCAACTTGAC ACTGTATAAG CTGGATGAAA TCATGCAGGG CGGCTTGCAA 
CAAGTGGTTG ACCCTTTGAT TAACGAATAT CAAGCTGAAC AACTGGCAGC ACTTAGCGAA 
GACAGTGCTT AA
 
Protein sequence
MKESIRSKLE NLVERLDEVN HLISDPEIIN NQNKFRNLTK EHSQLTPVVE TFNQFIQNQG 
DLQEAKDMIK SGDPDLKEMG QEELPELEKQ QATLEAELQK MLLPKDPNDD ANIFLEIRAG 
TGGDEAAIFA GDLFRMYSRY AETMRWQVEV INSQEGEHGG YKEIIARIIG DGAYSRLKFE 
SGAHRVQRVP ATETQGRVHT SAATVVIMPE AQDVEQIDLN PADLKVDTFR ASGAGGQHVN 
KTDSAIRITH IPTGTVVECQ DERSQHKNRA RAMSLLASRI MDERQRIHDQ EIAQERKSLV 
GSGDRSERIR TYNYPQGRVT DHRINLTLYK LDEIMQGGLQ QVVDPLINEY QAEQLAALSE 
DSA