| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0379 |
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| Symbol | |
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| ID | 3762326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 428724 |
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| End bp | 430346 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637785088 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_390649 |
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| Protein GI | 78484724 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAACAC ACAAGAAGAC ATTTTTTACA CACCGCCCGT TTGTAGAGCT GGAAAGAATT
ATTTCGTCGA ATAATTTAAT TCTGTTTGTC TTGATTGTGT TGATTATCAC GATAAATTCC
GCTGGCTTTT TGAGTGTTAA GTGGCTTCAG TCGGAGTGGA CACATCAATA CACTGTCTAT
CAAACCAAAC AAAAACTGTA CTTTGATCTT TATCGAGAAT CCGGCTACGG TGGATTTATT
CACACCTTTA AAAATGCCGT ACTCAGAAAA GACCCTGCCT ACCTAAAATC TCTGTCGGTG
CATCATCAAA ACGTTGAAAA AACGATTTCA ACACTTAAAT CTTTAGCAAC AACTCAATCC
GAACAGAGCA AGCTTCGTGA CGTCCAAAAC ACCTTTAATC GTTACTGGAA AAAGTACACT
TTGTTAGAAA AAGCGATGCA AGAAAACTGG TCAGCAGAAA GGTTGGATAA GCTCGTTTTT
GTAAATGATA AAGCGGCTTT AAAAGCGTTA AATGATCTCA CTGCGCTAAA CCAAGAAAAC
TTTAATCATT CTGTCGCCAG AAACAATCAA CTGATTCAAC GAGTGGGGCT TTATGAAACC
GTATCGCTGG GCGTGATTCT GTTTTTCAGT TTGATTTTAT TTTTCACTAT GAGAAAAAAA
GCTGGACTAG TGAATAAAGT GTTAAAAATG CAAAAGGACG CGGTTGAATA CAAAGAGCTT
TATGAGGCTA CGTTAGACAG TATGGTTGAT GCCTGTATTA TTACGAATGA GAAAGGGATT
ATTGAAAACT TTAACCAGAT TGCATTGCAA CGCTTCGGCT ACACAGCGGA AGAGTTAATG
GGGCAACCGA TTGAAATTCT CATTCCAGAA GGCGACCATA AGCGTAACCA TGCACATTAT
ATGGAAAGTT CGTCAATGCA TAAAAAAGTG CTTTTCAAAG GCCGAGAATT AAAGGCCATT
ACCAAACATG GTGAGTTATT ATCGTCTGAA ATTACGGTGA CGCCTTTGAA GCAAAGCGAG
GACTTGAAGT TTGTCGGTAT TATTCATGAC ATTTCCGATC GAATGAAGTT GATGGAACAG
TTGGGCTCAC TGTTAAATCA GCTAAGGGAT GAAGCCACGA AAGATTACTT AACAGGGTTG
TTAAATCGAA AAGCCTTTTT TGAACAAGCG GAGCAGATAT GGCTCTCAGC CAAAGAACAT
CATCAGCCGA TTTCATTGTT AATGATTGAT ATTGATCACT TTAAACGAAT TAATGATTCC
TTTGGGCATG ATGCGGGTGA TCGTGTCTTA ATAGAGGTGG CCAATGTGTT CAGTCAAAAT
TGTCGTGAAG AGGATTTAGT GTGTCGTTAT GGCGGGGAAG AGTTCATCAT TTTACTTGAA
AATAAAGATG AGCAGCCCAC ACTGGAGTTT GCTTCAAGAC TCAAGAAAGT TATTCAAGAA
ATGTCTGTTA GTGAGCAAGG CGAAGTGATT CGTTTTTCTA TCAGTGTTGG TGTGGCAACG
GGCTCTGCCC TTGAGCTAAA TTCTATTGAA ACGTTTATTT CTCATGCCGA TCAAGCGCTT
TATCAAGCCA AGGCGAATGG GCGTAATCGG GTAGAGGTAT TTCACGCAGA AGAGAAAACG
TAA
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| Protein sequence | MKTHKKTFFT HRPFVELERI ISSNNLILFV LIVLIITINS AGFLSVKWLQ SEWTHQYTVY
QTKQKLYFDL YRESGYGGFI HTFKNAVLRK DPAYLKSLSV HHQNVEKTIS TLKSLATTQS
EQSKLRDVQN TFNRYWKKYT LLEKAMQENW SAERLDKLVF VNDKAALKAL NDLTALNQEN
FNHSVARNNQ LIQRVGLYET VSLGVILFFS LILFFTMRKK AGLVNKVLKM QKDAVEYKEL
YEATLDSMVD ACIITNEKGI IENFNQIALQ RFGYTAEELM GQPIEILIPE GDHKRNHAHY
MESSSMHKKV LFKGRELKAI TKHGELLSSE ITVTPLKQSE DLKFVGIIHD ISDRMKLMEQ
LGSLLNQLRD EATKDYLTGL LNRKAFFEQA EQIWLSAKEH HQPISLLMID IDHFKRINDS
FGHDAGDRVL IEVANVFSQN CREEDLVCRY GGEEFIILLE NKDEQPTLEF ASRLKKVIQE
MSVSEQGEVI RFSISVGVAT GSALELNSIE TFISHADQAL YQAKANGRNR VEVFHAEEKT
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