Gene Tcr_0265 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0265 
Symbol 
ID3761435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp313346 
End bp314029 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content43% 
IMG OID637784970 
Productphosphoglycolate phosphatase 
Protein accessionYP_390535 
Protein GI78484610 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCAAG AAAAAATAAA ACCGGGATTC ATCTTAATTG ATTTGGATGG AACCTTGATT 
GACAGCGTGC CAGATTTGGC GTATTGCGTT GATGAAATGA TGAAACAGCT TGGTATGCCT
GTTCGTGGTG AAGCCGCGGT ACGTAACTGG GTTGGAAATG GCGTTCAGCG TCTTGTTGAA
AGAGCGTTGA TTAACTCTGT CGATGGCATG CCGGATCAAG ACTTGATGGA TAAGGCCTAT
CCTATTTATC TTGAGCTTTA TAAAGAAAAT ACTTCTAAGC GCAGCTGTGT GTATGAAGGG
GTTGTTGAAG GAATTGAATG GATGAAAGCA CAAGGCTATC GTGTGGCATG TGTCACCAAC
AAAGCCGCAG CCTTTACCAT TCCGCTTTTG AAAGATAAAG GGCTTTACGA TTCTTTTGAA
GTGATTGTTT CTGGTGATAC TTGTGAAGAG AAAAAGCCGC ATCCAATGCC ATTACTTTAT
GCGGCAGAAC AGTTGGGCGT AACACCGGAA AATGCTTTGA TGATCGGTGA TTCGAAATCC
GATGTGAAAG CAGCCCGTGC TGCTGGCTTT CATATTTTCT GCATGACTTA TGGGTATAAT
CATGGTGAAG ATATTCGAAA CTATGAGCCT GATGCGGTTA TGGGTTCCTT TATGGAATTG
CCAAATTACT TAGCGGCTAA ATAA
 
Protein sequence
MSQEKIKPGF ILIDLDGTLI DSVPDLAYCV DEMMKQLGMP VRGEAAVRNW VGNGVQRLVE 
RALINSVDGM PDQDLMDKAY PIYLELYKEN TSKRSCVYEG VVEGIEWMKA QGYRVACVTN
KAAAFTIPLL KDKGLYDSFE VIVSGDTCEE KKPHPMPLLY AAEQLGVTPE NALMIGDSKS
DVKAARAAGF HIFCMTYGYN HGEDIRNYEP DAVMGSFMEL PNYLAAK