| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0249 |
|---|
| Symbol | |
|---|
| ID | 3761514 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 299398 |
|---|
| End bp | 300177 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637784954 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_390519 |
|---|
| Protein GI | 78484594 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3031] Type II secretory pathway, component PulC |
|---|
| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00883556 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCTGA TTGGCATTAC ACTTTGTGCG TGGATTTTAG GCGGCCTAGT TGCTTTTAAT
TTCAATGTCA TAACGACGCC AACCATTCCA AGTCTCACCG TACAAAAGCC TGTAAAATCA
GTAGTAGGAG CGCCTTCCTA TTTAATGGGA AGGGAAGTAT CTGATTCTGC TTTAAGCACG
TCCCCTTCAA CAGAGAATAT GCCATTAACG CGCTTGAATT TAAAACTGAT TGGATTGGTG
GATCTGGGAA CGAAAGGTGT CGCCTTAATT CAGTCTTCTC AAACCACTTA TGTGGTGAGC
CGAGGGGAAG AATTTTTAAA TGACCTGATC CTACAAGACA TAGGTGACCG TTACGTCATT
TTAAATAATC GAGGCCAACT CGAAAAACTA TTGCTGGTAG ATAATACAAA AGATATGGTC
TCAACATCCA TTCAAAAACT GAATTCTGGT ACGGTTTCAA CAACACAAAA AAAACAATTG
AAAAAAATAG GCGCACAATT AAAACAGTCT CCCTTAATAT TGTCCCAGCT TTTATCCTTT
AAAATAATTG AACGAAATGG CCAATGGGAA GGCGTTAAAG TTTGGCCGAA AGCAGACAAA
GCCTTATTTA AAACATTGGG CTTTAGGGAA GGAGATGTGG TCACTCACAT CAATGGTAAA
AGTATTAAAG AGATTGCTCA AAATCAAACC ATCTGGAAAA ATTTGATGAC CTTGAGTCAA
TTTGAATTGA TCGTTAAACG CAATAATGAC ACTAAAACCC TACAGGTAAA CCTGGATTAA
|
|---|
| Protein sequence | MLLIGITLCA WILGGLVAFN FNVITTPTIP SLTVQKPVKS VVGAPSYLMG REVSDSALST
SPSTENMPLT RLNLKLIGLV DLGTKGVALI QSSQTTYVVS RGEEFLNDLI LQDIGDRYVI
LNNRGQLEKL LLVDNTKDMV STSIQKLNSG TVSTTQKKQL KKIGAQLKQS PLILSQLLSF
KIIERNGQWE GVKVWPKADK ALFKTLGFRE GDVVTHINGK SIKEIAQNQT IWKNLMTLSQ
FELIVKRNND TKTLQVNLD
|
|---|
| |