| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0208 |
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| Symbol | |
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| ID | 3761647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 246535 |
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| End bp | 248472 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637784913 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_390478 |
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| Protein GI | 78484553 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTGA GTAAACAAAT GATGCTTTTT ATCACGGCAA TGCTAATTAT TTTGCTACTG
GGAACCTTTT TACTCAATTT AAACAATACC CGCTCCTTTT TAGAAACTCA GCTACAGTCT
CATGCCCAAG ATACGGCCAC CTCTTTGGGG TTATCTCTAA GCTCTGTTGC CAACCAGGAA
GATTCTTCCA GCATGGAAAC CATGATTAAC GCGGTGTTTG ACCGTGGTTA TTACTCGCAC
ATCACCATGC GAGATATGGA TGGCGAACTG ATTTATGAAA AAAGCAATGC ACAGAAAATA
AACGGCATAC CGAATTGGTT CATTGGTCTG ATTTCAATTG AAGCGCCCGA TGCTGAAGCT
TTAGTTCAAT CTGGCTGGGT TCCGATGGGG CATCTGATTG TGCAAAGTCA CCCAGGCTAT
GCTTATATTG AGCTGTGGAA AACGGCCATT GCATTATTGC TCTGGTTTTT ATTGGCCGCC
GCGATTGCCA TCGGGTTTGC CGCCTACGCC TTGCGCGTCA TGCTGGCCCC TCTAAAAGAA
ATGGAAAAAC AAGCCGAAGC GATTGTGCGC AAAGAATATC TTTTACAAGA TTCGTTACCT
GGCACCATTG AATTCAAACG TGTGGTCTCG GCCATGAATG CGATGGTGCA TAAAATGAAA
ACCGTTTTTG ACCGAGACGC ACAACATGCC GACAAACTAC AAAAACTGGC CTATCAGGAC
AGTGTCACCG GGTTAAGTAA CCGTCGACAC TTTGAAATGA ACATCGATGC CTTGCTGGAC
AAACAAGCCG AAGCCTCGCC AGGTGCTATC TGTCTTGTCC GCATTCATCA TTTAAAAGAA
TTAAATGATC AGTTCGGCTA TATGACAGGG GACAATCTAG TCAAAGCGTT AGCCGATAAA
ATGACGCATA ATTTGAACTT TGAAAACAGC TTTTATGCCC GTCTGAACGG CTCGGAATTG
CTGACAATTA TGCCGACCAT CTCTGGTAAA AAATTATCCA AACCTGTTTC GGAAATATGC
AAAGCCGTGC CGAAAGTTTT AAAACACTTA AAAGCCTCCG AATCAAAAAT CAGTATATCT
GTCGCTTACC TTGACTATTT GCCAGGAAAT GATCGCAGCC AATTATTGGC GCAATTGGAC
TTTGCCACCA AGGAGGCCAG TCAACTGGGA CAAAATGAAT TCTTCTATTA CCAGCCTGAA
AAAGCTCATG CTGAAGAGGA TACTCGCTGG AAAAGCATGC TCAACAACGC CATCGAAGAC
AAGCGGTTTA TTTTATTCCA GCAAGCGGCT TATGATGAAA ATCGAAAAAT TCATAACCGA
GAAGCCTTGC TGCGGTTAAA AGATGAAAAC AACGCCATTC ATTCTGCCAG CTTTTTTATT
CCCGCCATCC GAAAACTGAA CAAAATGGAT GAAATTGATA AACTCGCTGT CTCTTTGGCT
GTGACCTACC TGTCAAACCA TCGTTTATTC CATGGAGAAC GGCTTGCCAT TAACCTTGGG
CAATGCGTTA TTCGTGATCA AACATTACAG GACTGGTTAT TCCAACAACT TGAAACGGTG
GACACGAATC AGATTGCCAT CGAAATTCCT GAAGCCATTA TCCACGCCAA CCGAAACGAA
GCCCGCCCCC TGATCGAAAA AATTAAAAAC GCAGGCATTC ACTTTGGGTT AGATAATTTT
GGTAATCGTT TTACCAACAT GAATTACATT CAAGAATTCC GTCCGGACTA TATCAAGCTG
GACACATCGT TCTCAAAGGC CATTGAAGAA GATGATCAGA CCCGATATTA CGTTTCCAGC
GTGTGCGATA TGTCAGAAAG TTTGGACATT CAAATCATTG CCATGTCGAT TGAAACTGAA
ACACAATTGC AAGCATTTAA AGAATTAGGC ATTCATCATT TTCAAGGGTA TTATTTCGGA
GCGCCAAAAC CCTTATAA
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| Protein sequence | MSLSKQMMLF ITAMLIILLL GTFLLNLNNT RSFLETQLQS HAQDTATSLG LSLSSVANQE
DSSSMETMIN AVFDRGYYSH ITMRDMDGEL IYEKSNAQKI NGIPNWFIGL ISIEAPDAEA
LVQSGWVPMG HLIVQSHPGY AYIELWKTAI ALLLWFLLAA AIAIGFAAYA LRVMLAPLKE
MEKQAEAIVR KEYLLQDSLP GTIEFKRVVS AMNAMVHKMK TVFDRDAQHA DKLQKLAYQD
SVTGLSNRRH FEMNIDALLD KQAEASPGAI CLVRIHHLKE LNDQFGYMTG DNLVKALADK
MTHNLNFENS FYARLNGSEL LTIMPTISGK KLSKPVSEIC KAVPKVLKHL KASESKISIS
VAYLDYLPGN DRSQLLAQLD FATKEASQLG QNEFFYYQPE KAHAEEDTRW KSMLNNAIED
KRFILFQQAA YDENRKIHNR EALLRLKDEN NAIHSASFFI PAIRKLNKMD EIDKLAVSLA
VTYLSNHRLF HGERLAINLG QCVIRDQTLQ DWLFQQLETV DTNQIAIEIP EAIIHANRNE
ARPLIEKIKN AGIHFGLDNF GNRFTNMNYI QEFRPDYIKL DTSFSKAIEE DDQTRYYVSS
VCDMSESLDI QIIAMSIETE TQLQAFKELG IHHFQGYYFG APKPL
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