| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0206 |
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| Symbol | |
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| ID | 3761645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 242865 |
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| End bp | 244157 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637784911 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_390476 |
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| Protein GI | 78484551 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATT TGAGTCAAGC GGCACTCGAA AAACCGACCA TTAAATCTCA ATTGATTGTC
TGGATCATGT TTTTAGTGCT CATCTGGTTA TTGGTTTGGG CCAGTTATGC CGAGCTCGAC
AAGATCGTTC GAGGACAAGG AAAAGTAGTT CCCTCTACTA AAATTCAAGT GGTTCAGAAC
TTAGAAGGCG GCATTGTTGA AAATATTTTT GTACACTCGG GCGACCAAGT GCAAAAAGGG
CAAATTTTGT TGAAACTGGA TAATACCCAG TTCGTCAGCT CTTATGATGA AACCGAAGCA
CAGCTTTATG ATTTAAGAGC TCAAGCAGCG CGGTTATCGG CAGAAGCATT CGACAAACCG
TTTAAAATCA ACCTTCCTTC CGAAAACCCA AAAGTCGAAG CGATTTTTGA GCGTGAAAAA
CAGCTTTATG AAAATCAATT ACAGCAACTT GAAACGACTC AGCAAATCCT AAACGAAAAA
ATCACACAGA ACCGTTCTGA ACTTCAGGAA GCCTATAACC AGTTCAAACA GCTGTCTAAA
TCTTACGATT TATTACGGCA AGAAATCGAA ATTATGAAGC CGTTGGTCAA AGAAGGCATC
GCTTCTGAAG TCGACTTGCT GAAAACGCGT CGTGAGGCTA ACGACGCTTA CTCACAATTA
CAGACAACTC AGAATTCGAT TCCCCGTTTA AAATCGGTGA TCAACGAATC GATTAATAAA
AAACAAGAAG CCAAACAAAA ATTCCGAAAT GAAGCTCAGC AAGAGTTAAA TACAGTACTG
GCCAAACTGT CCCAGCTTGA AAGCTCTAAA ACGGCATTGG AAGACCGTGT CCGTCGAACC
AGTATCACAT CGCCGGTCAA TGGCACCATC AGCGAACTCT TAGTGACCAC CATTGGTGAA
GTTATCCAAC CGGGTAGCGA CATTATTAAA ATCGTTCCAC TGGATGATTC TCTTGTACTT
GAAACCAAAA TCTCACCGGC GGATATCGGT TTTGTGTACC CTGGCCTCAA GGCTAAAATA
AAGTTCACCG CTTATGACTT CGCCATTTAT GGTGGCTTGG ACGGTACGGT AGAAAAAATT
TCAGCGGATA CCATTCTAGA TGAAGAAGGA AACAGTTTTT ATATCGCCCG CATAAAAACG
GATCGAAACT ACCTCGGTTC GGAAAAAAAT CCATTGTCTT TGTTACCCGG AATGATGGCA
ACAGTGGATG TGGTTGTCGG TAAACACACA ATATTAGAGT ATTTAATCAA ACCGATTATC
AAAGCCAAAG ATTTGGCTCT CAGAGAGTCT TAA
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| Protein sequence | MSNLSQAALE KPTIKSQLIV WIMFLVLIWL LVWASYAELD KIVRGQGKVV PSTKIQVVQN
LEGGIVENIF VHSGDQVQKG QILLKLDNTQ FVSSYDETEA QLYDLRAQAA RLSAEAFDKP
FKINLPSENP KVEAIFEREK QLYENQLQQL ETTQQILNEK ITQNRSELQE AYNQFKQLSK
SYDLLRQEIE IMKPLVKEGI ASEVDLLKTR REANDAYSQL QTTQNSIPRL KSVINESINK
KQEAKQKFRN EAQQELNTVL AKLSQLESSK TALEDRVRRT SITSPVNGTI SELLVTTIGE
VIQPGSDIIK IVPLDDSLVL ETKISPADIG FVYPGLKAKI KFTAYDFAIY GGLDGTVEKI
SADTILDEEG NSFYIARIKT DRNYLGSEKN PLSLLPGMMA TVDVVVGKHT ILEYLIKPII
KAKDLALRES
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