Gene Tcr_0169 details

Gene Information

• Locus tag: Tcr_0169
• ID: 3762480
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: -
• Start bp: 199629
• End bp: 201452
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637784874
• Product: GTP-binding protein TypA
• Protein accession: YP_390439
• Protein GI: 78484514
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACACAG ATCATATTCG CAACATTGCC ATTATTGCGC ACGTTGACCA CGGTAAAACC 
ACGTTGGTTG ACCAACTTCT AAGACAATCT GGCACCTTTG ACGATATCCG TAAAGACATG 
GGGGATCGTA TGATGGACTC CAATGATCTA GAAAAAGAAC GTGGTATCAC GATCCTGTCT 
AAAAACACAG CCGTCAAATG GAACGATTTC CGTATCAATA TCGTTGATAC TCCAGGCCAT 
GCCGATTTCG GTGGTGAAGT TGAACGTATT CTATCGATGG TTGACTCGGT ATTGCTTTTG 
GTTGATTCCG TTGAAGGACC AATGCCACAA ACACGATTTG TAACGGAAAA AGCCTTGAAG 
CAAGGCCTAA AACCAATTGT TGTCATCAAC AAAATTGACC GCCCAGGTGC GCGCCCTGAC 
TGGGTTCTAG ACCAGACATT TGATTTGTTT GACCGCCTAG GAGCCACCGA TGAGCAAATG 
GATTTTGATG TTATCTATGC CTCGGGCTTA AACGGCTTTG CCGGACTGGA AGAAGATGTT 
CGCGAAGGTG ACATGACTCC AGTGTTCAAA ATCATCACTG AAAATGTACC TGCGCCAGAT 
GTTGATTTAG GCGGACCTTT CCAATTGCAA TGTATCTCGC TGGATTATGA CACTTATAAA 
GGGGTCATTG GAACAGGCCG TATCAAACGC GGTGCCGTTC AAACAGGGAT GCCGATTGTT 
ATCGTTGATG CCGAAGGGAA AGAGCGTAAA GGTAAGATGG GTGAACTGTT CGGTTACCAC 
GGTCTTGAGC GTGTCAGCGT TGAAGAAGCG CATGCGGGTG ACATCGTAGC ATTCACTGGA 
TTAGACCCTT TAAACATTTC AGATACATTA TGTGATCCAA ACCATGTTGA AGCCTTACCG 
GCTTTGACGG TTGATGAACC AACGGTCAGC ATGACATTCC AGGTCAACGA CTCTCCTTTT 
GTAGGACAAG ATGGTAAGTT ATTAACGTCT CGCCAAATCC GTGAGCGCTT GGATAAAGAA 
TTATTAACCA ACGTTGCCTT ACGCGTTGAA GAAACGGAAG ATGCCAACAA ATTCCGAGTC 
TCTGGTCGTG GAGAACTGCA TCTATCGGTT CTGATTGAAA CAATGCGTCG TGAAGGTTTC 
GAAATGGGAA TCTCTCGTCC GGAAGTTATC TTCAAAGAAG TTGATGGTGA AACGCATGAA 
CCGTATGAAA ACCTAACGGT GGACGTGCCA GAAGAAGCGC AAGGCGCCAT CATGGAAAAA 
CTCGGTGAGC GTAAAGCCGA AATGCAAGAC ATGGTGCCAG ACGGACATGG TCGCGTGCGT 
ATCGATTTCA TCATTCCATC TCGCGGTCTG ATCGGTTTCC GTACCGAATT TATGACGGCG 
ACCCAAGGAA ACGGTTTGAT TTTCTCAAGT TTTTCACATT ATGGTCCAAA ATTCTCTGGC 
ACATTGGGTG AACGTAACAA CGGTGTTTTG ATCTCAATTG GTCAAGGGAA AGCATTGGCA 
TTTGCGCTGT TTAACCTGCA GGATCGTGGT CGCTTATACA TTGGTCACGG GGAAGAAGTG 
TACGAAGGGA TGATTATCGG ACTGCACAGT CGTGCCAATG ACTTAACGGT TAACCCTTTG 
AAAGGGAAAC AGTTAACGAA CATGCGTGCC TCTGGAACCG ATGAAGCCTT AACTCTAACG 
CCACCGATCA TTTTCTCGCT GGAACAAGCG CTTGAATTTA TCGATGATGA TGAATTGGTT 
GAAGTCACAC CACATCACGT ACGTATTCGT AAAAAATTAT TGACTGAAAA CGAACGTAAA 
AAAGCAGGGC GTAGCAAGCT CTAA 

 

Protein sequence

MNTDHIRNIA IIAHVDHGKT TLVDQLLRQS GTFDDIRKDM GDRMMDSNDL EKERGITILS 
KNTAVKWNDF RINIVDTPGH ADFGGEVERI LSMVDSVLLL VDSVEGPMPQ TRFVTEKALK 
QGLKPIVVIN KIDRPGARPD WVLDQTFDLF DRLGATDEQM DFDVIYASGL NGFAGLEEDV 
REGDMTPVFK IITENVPAPD VDLGGPFQLQ CISLDYDTYK GVIGTGRIKR GAVQTGMPIV 
IVDAEGKERK GKMGELFGYH GLERVSVEEA HAGDIVAFTG LDPLNISDTL CDPNHVEALP 
ALTVDEPTVS MTFQVNDSPF VGQDGKLLTS RQIRERLDKE LLTNVALRVE ETEDANKFRV 
SGRGELHLSV LIETMRREGF EMGISRPEVI FKEVDGETHE PYENLTVDVP EEAQGAIMEK 
LGERKAEMQD MVPDGHGRVR IDFIIPSRGL IGFRTEFMTA TQGNGLIFSS FSHYGPKFSG 
TLGERNNGVL ISIGQGKALA FALFNLQDRG RLYIGHGEEV YEGMIIGLHS RANDLTVNPL 
KGKQLTNMRA SGTDEALTLT PPIIFSLEQA LEFIDDDELV EVTPHHVRIR KKLLTENERK 
KAGRSKL