Gene Tcr_0123 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0123 
Symbol 
ID3762492 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp155802 
End bp156866 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content47% 
IMG OID637784828 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_390393 
Protein GI78484468 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family
[TIGR01464] uroporphyrinogen decarboxylase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0180562 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGAGC TACAAAACGA CCGTTTCCTA CGTGCCCTAC TCAAAGAACC CGTTGATCAG 
ACTCCGGTTT GGATGATGCG CCAAGCAGGC CGCTATTTAC CAGAGTACCG CGCTACCCGA
AAACAAGCAG GTTCTTTTAT GGATTTGTGC CGTAATAAGG AATTGGCGTG CGAAGTCACC
TTGCAGCCAC TTGAACGTTA TCCGTTAGAT GCCGCTATCT TATTTTCTGA TATTTTGACG
ATTCCAGATG CAATGGGATT GGAGTTACGT TTCCAGACAG GTGAAGGCCC TATTTTTGAT
AAACCAATCA AAAGCATGTC CGATGCAAAA AAACTGTTCG TTCCGGATAT GGCCTCAGAG
TTAGGGTATG TAATGGATGC TGTAAGCACT ATTCGTAAAG CATTAGACGG CCGCGTTCCT
CTGATCGGAT TTTCGGGAAG CCCTTGGACC TTGGCGACTT ATATGGTCGA AGGCGGCTCC
AGTAAAACGT TCGCGAAAAT CAAAGCGATG ATGTACGATC AGCCTGCCAC GCTCCATCAT
ATTTTGGATG TTCTAGCCGA TTCGGTCATT GCTTATTTAA ATGCACAAAT CGAAGCCGGT
GCGCAAGCGG TGCAGATTTT TGATACTTGG GGCGGCGTAT TGACCCCTCG TGACTACAAA
GAGTTTTCAT TAAACTACAT GGCCAAGATC GTCGATGGTC TCAAGCGTGA AAACGATGGC
CGTAAAGTGC CTGTGATTTT GTTCACAAAA GGCGGCGGTC AGTGGTTAGA ATCAATGGCA
GAAACAGGCT GCGATGCCCT TGGGTTGGAT TGGACAACGG ATATTGATGA CGCTCGTGCA
CGTGTGGGTG ATAAAGTCGC ACTGCAAGGT AACATGGATC CGAGTGTGTT ATATGCGTCT
CCAGACAGAA TTCGAGAAGA AGTCGCAACC ATTTTAGAGA AATATGGCCA AGGAACAGGT
CATGTCTTTA ACTTGGGTCA TGGCATCCAC CCTGAAATTG ATCCAGAACA TGCTGGAGCC
TTTATCAAAG CCGTGACCGA GTTGAGCCCG AAATACCATA AGTAA
 
Protein sequence
MAELQNDRFL RALLKEPVDQ TPVWMMRQAG RYLPEYRATR KQAGSFMDLC RNKELACEVT 
LQPLERYPLD AAILFSDILT IPDAMGLELR FQTGEGPIFD KPIKSMSDAK KLFVPDMASE
LGYVMDAVST IRKALDGRVP LIGFSGSPWT LATYMVEGGS SKTFAKIKAM MYDQPATLHH
ILDVLADSVI AYLNAQIEAG AQAVQIFDTW GGVLTPRDYK EFSLNYMAKI VDGLKRENDG
RKVPVILFTK GGGQWLESMA ETGCDALGLD WTTDIDDARA RVGDKVALQG NMDPSVLYAS
PDRIREEVAT ILEKYGQGTG HVFNLGHGIH PEIDPEHAGA FIKAVTELSP KYHK