| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0090 |
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| Symbol | |
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| ID | 3762224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 117029 |
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| End bp | 118291 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637784795 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_390360 |
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| Protein GI | 78484435 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.260319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACTGACA ATATGAGAGT GCGAAATTTG CATCAAAAAA TACTGAATCT GATAAATAAT
AGTGAAACAA TCGTTTTCTA TTGCGAATAC GCACCTAGAT GGCCCGTTCT TTTTTTAAGC
GAAAACTTCA ATGCTTTCGG TTATACGCCA GAACAGTTTT ATGCCCAAGA AATTTCCTAC
CAGGATCTTA TCCACCCTAA TGATTTAGCT GGACTGGAAC AAGCCGTTGC TGAGCAGGCC
GAGTCTGGCG CACCTTATCT TTCTAAACGT GTCCGCTTAA GAAAATCTGA TCAAACCTAT
GCTTGGATTG ATATTCGGTT GACCTTTGAG CGAGATGACA CGGATCATGT CACGCATTTG
CTGGGCAAAA TTATGGATAT CACGAAAACG ATATCATCAG AAGAGCAGGC CAGTCTGTTT
GCCAAAGTGA TTCAGCAAAC TGCAGATTTC GTCAAGATTA CCGATAAAGC CGGTTATTTG
GTGTTTGTGA ACCAAGCGTT AATGGATAAA ACCGGTTATA CAGAACAGGA GTTAATTGGT
AAAACCCCTG CCGTTCTGAA ATCCGAAATG CAGGACCAAG AAAAAGCGAA ATCGCTATGG
GACACCATTT TATCTGGCGA GGTGTACCAT AATCGTATTA TGAATCGTTG TAAAGACGGC
TCCACCTATT ATGAAGAAAC CACCATCAGT CCTATTTTTA ATCGGGATGG TGACATTGAA
TATTTTGTTT CAACAGGAAA GGATGTCTCT GAGCAAGTCA AAATGCAACA GGAGCTGAAT
GATCTGGCGA TGAAGGATGC CTTAACCGGA ATTTGGAATC GTCGTCACTT AACAGACGTG
GTGAACACTG AAATGAAACG TGTGAATCGC TATGGTGGTC GTTTCGGCAT GATTATGTTT
GATGTTGATT ATTTTAAGCA GATCAATGAT GACTTTGGCC ATGATATTGG CGATGAAACG
CTTGTGCAGA TTGCAAAGAT TGTCCAAAAA ATTGTGAGAG AAACAGATTA CATCGGCCGT
TGGGGAGGTG AAGAGTTCTT GTTAATTGCT TTAGAGCTGG ACGCCTCTTT GACCGCTAAA
TTGGCCGAAA AGATTCGAGA AGCGATTGAA GAATTTGTTT TTCCTAAAGT CGGTCAAGTA
ACCGTCAGTT TAGGTGCGAC GGTCTATCAT AAAAACGAAA CGGAAGCCCA GTTGTTTAAA
CGGGCAGATG AAGCGCTTTA TTTGGCAAAG CGTCATGGAC GTAATCGAGT GGAAGTGTAC
TAA
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| Protein sequence | MTDNMRVRNL HQKILNLINN SETIVFYCEY APRWPVLFLS ENFNAFGYTP EQFYAQEISY
QDLIHPNDLA GLEQAVAEQA ESGAPYLSKR VRLRKSDQTY AWIDIRLTFE RDDTDHVTHL
LGKIMDITKT ISSEEQASLF AKVIQQTADF VKITDKAGYL VFVNQALMDK TGYTEQELIG
KTPAVLKSEM QDQEKAKSLW DTILSGEVYH NRIMNRCKDG STYYEETTIS PIFNRDGDIE
YFVSTGKDVS EQVKMQQELN DLAMKDALTG IWNRRHLTDV VNTEMKRVNR YGGRFGMIMF
DVDYFKQIND DFGHDIGDET LVQIAKIVQK IVRETDYIGR WGGEEFLLIA LELDASLTAK
LAEKIREAIE EFVFPKVGQV TVSLGATVYH KNETEAQLFK RADEALYLAK RHGRNRVEVY
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