Gene Tcr_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0080 
Symbol 
ID3761465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp101684 
End bp102817 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content47% 
IMG OID637784786 
Productlytic transglycosylase, catalytic 
Protein accessionYP_390351 
Protein GI78484426 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACGTC GCCAATTTCT TGCCCTATTG TCCAGCACTG GATTGGTGTC CGCCTGCACC 
GTGACCGAAG TTCGGCGTGG TATCAACTCG GCTCAACAAC TCTCAAATGG TGATGTTCCG
GGTGCTGTCA GCGCACAACT TCCTTCCAGC GGCATCGCAG AAGTGGATCA ACTGGTACGT
CGTCAACTTA AAACCTTAAT CCAGGAATTA GCGAAGACCT GGGGCGACAA AAAGGTAGCC
AGTCCTAAAG AATACGTTAA GTACACCGAT CAATATCAAA GCCGAGCCAT CGTCAACTTT
AAAACCGGGC TGATCCGAGT GGAGACGGTT GAACAAAAGT CCCCCAAAAG TGCGTTAAAA
GCCGCCATCA TCAGCACGCT TCTGACGCCG GAAAACCCCG CCAAGGTCGA CCTTTTATCC
GATGAAGCGG TGACAACCGG TCAAAAACCT TTTTTACATG ATTTGGTTAT CGACCAAGAT
AAAAAAGCCG TCGGTACCCA GTGGCGTGCC AACCGTTATG CCGAGTATTT GATGAAGACC
GCTTACAAAG TGGATTCTTA TAACCAGAAA ACACGCCATT ATGTGACCTT TGCAATGGTC
AAAGGTCACA ACCAGACACA ACAAAAGCAC TATGCCACTC AAGTGAAACG CCAGGGAAAA
CGCTTCAATA TTGATCAAGC TTTGATCTAT GCCATTATTG AAACCGAAAG CGCCTTTAAC
CCTTACGCCA TGAGTCACAT CCCGGCGTAT GGACTGATGC AGATTGTGCC ATCTTCGGCG
GGGCGCGATG CTCATCGATT GCTATACAAA AAAGACGGCA TTCCGACCAA AAACTATCTC
TTTCAGGCCG ACAACAACAT TGAGATGGGC ACAGCGTATC TTCATATCTT ATTTACACGC
TATTTGGCTC AAGTCAAAAA CCCAAAAGCG CGGGAATATT GTTGCATTGC AGCCTACAAC
ACCGGCAGTG GTAATGTGCT TAAAGCGTTT GACACAGACC GCTCTAGAGC GTTTGATAAA
ATCAACACCT TAAGTGCTTC CTCGGTTTAC AGCCATTTGC GCAAACATCT GAAATATGAA
GAAGCCCGTC ACTATCTCTA CAAAGTCACG CAAAAGAAAC GCGCTTATGT TTAA
 
Protein sequence
MKRRQFLALL SSTGLVSACT VTEVRRGINS AQQLSNGDVP GAVSAQLPSS GIAEVDQLVR 
RQLKTLIQEL AKTWGDKKVA SPKEYVKYTD QYQSRAIVNF KTGLIRVETV EQKSPKSALK
AAIISTLLTP ENPAKVDLLS DEAVTTGQKP FLHDLVIDQD KKAVGTQWRA NRYAEYLMKT
AYKVDSYNQK TRHYVTFAMV KGHNQTQQKH YATQVKRQGK RFNIDQALIY AIIETESAFN
PYAMSHIPAY GLMQIVPSSA GRDAHRLLYK KDGIPTKNYL FQADNNIEMG TAYLHILFTR
YLAQVKNPKA REYCCIAAYN TGSGNVLKAF DTDRSRAFDK INTLSASSVY SHLRKHLKYE
EARHYLYKVT QKKRAYV