Gene Tcr_0072 details

Gene Information

• Locus tag: Tcr_0072
• ID: 3761457
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: -
• Start bp: 91213
• End bp: 93207
• Gene Length: 1995 bp
• Protein Length: 664 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 637784778
• Product: TPR repeat-containing protein
• Protein accession: YP_390343
• Protein GI: 78484418

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGCGA CGTTGCACTT CTTACGCCCA CTTTGGTTAA TCGGTTTTAT TCCGACCTTT 
TGGCTCATTT GGAAGCTCTG GCAAATGACC GGCCAAAAAG GGGCTTGGAA TCACATTATT 
GCCCCGCAAT TCAGATCGGT TTTATTGGGC AAAAAATCGG ACGAAAGTTT TTTCCCGTGG 
GCCGCACTCG GACTCGCTCT TCTTTGGTCA ATCATGATCA TTGCTTTATC AGGACCGACA 
TGGCAAAAAG TCGAGCTTCC GGCTGAAAAA AATCGTCAAG GCAGTGTCAT TCTGTTGGAC 
TTATCTTTAT CCATGCTCGC TGACGATCTC AAGCCGAATC GGCTCAGCCG AGTACGCTAT 
AAAATTCTGG ATTTGCTTAA GGCGCACCCG GAAATCAATA TGGGCATGGT GGCTTATGCC 
GGTACAGCTC ATACCATCGC CCCCATTTCT GAAGATAATC AAACCTTACA GTCTTTAACC 
CCGACCTTAA CGCCCTTGAT TATGCCTCGA TTTGGAGCCG ATGCCTTGGC CGGTTTTAAA 
AAAGCCAATG CTTTACTTCA AGGCGCGAAA GTACAAAAAG GCCATATCAT TTGGATCACA 
GATGATATCG AAAAACCGGA AATTAACACC ATAGCGCAAT TTGTTAAACA GCATCATATT 
TCCCTTAGCA TCTTAGTGGT GGGAACCGCC GATGGCGGCC CGATAAAGGT TCCTGATTAT 
GGCTTAGTCA AAGAAGAAGA TGGCCGGATT GTAATGGCAA AAGTACCTTT TAAAGATTTT 
TATACCCTTT CTCAACGCAC ACAAGCCAAT ATTTCAACCT TGACGATGCA GCAAACAGAT 
ATGGCCGATC TATTGCCTAA TGTGCTGATG CAAGCGGCTC GCTCAAATGA AAAAGACGCA 
GCGTCGGAAA AAACCCTAAC CAGCTGGCTC GATTCAGGCG CTTATTTGCT GTTTGTTATT 
CTGCCTCTGG CGGCTTTAGC CTTCCGCCGC GGCTGGGCAT TTTCCTGGAT AGGCATAGGT 
CTCGCGACCC TGTTACTGCC TGCCTTGATG CTGAACCCTT CCTCCAGTTT TGCCAAAGAG 
AACAAACCCG AAAGCGACTC CAGTACTGCC TTTTCCGATG TGTTTAAATC GCCTGATCAA 
CAAGGCTATG AAAAATGGCA ACAACAGGAT TATCAAACCG CCGCAGACCG ATTTGAAGAC 
CCTCTCTGGA AAGGAGCCAG CCTTTACCGA CAAGGCAAAT ACAAAGAGGC CATTAAACAG 
TTCAGCTTAG ATAAAAGTGC CAAAGGGCGA TACAACCAAG GCAATGCTTT GGCCAAGCAA 
GGCGATTTCA AAGCGGCTAA AGAACAATAT CAGAAAGCCT TAAAACAAGA TCCAAACATG 
CTGAATGCTA AAAAGAACTT AACGCTGATG GACAAAATTC TGGCGTCACA GAAAAAATCG 
GCCGCTAACA ACAACACCAA AGATCAAAAG CAATCCAAAC AAGGAAAATC ACCCGGCAAT 
GCGAATCCGG ATGGTGACTC CCCTAAAAAT AAAACAGCCA ATGGCAGCCA ATCAGGCCAG 
CAAGGCCGCC AGGACCCTAA TGCCTCTGAA ACCGGCTCAG GCAATCAACA AAATGACTTA 
AACAAACCCT ATCAACCCAA TCCCAACGAA ACGAAACCGA CGTCGCCGTC AGAAAACAAA 
TCAAACAAAA ATACGGATCC AGCCGACAAA CCCCCTTCTG CGTCTCAAAC CGATTTATCA 
GACGGCAAAA ACTCGGAGAA AAATTCTAAG TCAGCCAATC AAGCGACAAA ACGGTTACAA 
AAATCGCTCG ATTCCAATAA CAACCAACAA GCGTCTGAGG CCTTAACCCA ACAACAAGCC 
GAAACCCAAC AGGCACAGAA AAACTGGCTA AACCAAATCC CGGACGAACC TGGCTTGTTT 
TTAAAACGTA AATTTGAATA CCAATATCAG CAACAAGGCT CCAAAACGGA TCGTGAACCC 
GATAAAATCT GGTAA 

 

Protein sequence

MEATLHFLRP LWLIGFIPTF WLIWKLWQMT GQKGAWNHII APQFRSVLLG KKSDESFFPW 
AALGLALLWS IMIIALSGPT WQKVELPAEK NRQGSVILLD LSLSMLADDL KPNRLSRVRY 
KILDLLKAHP EINMGMVAYA GTAHTIAPIS EDNQTLQSLT PTLTPLIMPR FGADALAGFK 
KANALLQGAK VQKGHIIWIT DDIEKPEINT IAQFVKQHHI SLSILVVGTA DGGPIKVPDY 
GLVKEEDGRI VMAKVPFKDF YTLSQRTQAN ISTLTMQQTD MADLLPNVLM QAARSNEKDA 
ASEKTLTSWL DSGAYLLFVI LPLAALAFRR GWAFSWIGIG LATLLLPALM LNPSSSFAKE 
NKPESDSSTA FSDVFKSPDQ QGYEKWQQQD YQTAADRFED PLWKGASLYR QGKYKEAIKQ 
FSLDKSAKGR YNQGNALAKQ GDFKAAKEQY QKALKQDPNM LNAKKNLTLM DKILASQKKS 
AANNNTKDQK QSKQGKSPGN ANPDGDSPKN KTANGSQSGQ QGRQDPNASE TGSGNQQNDL 
NKPYQPNPNE TKPTSPSENK SNKNTDPADK PPSASQTDLS DGKNSEKNSK SANQATKRLQ 
KSLDSNNNQQ ASEALTQQQA ETQQAQKNWL NQIPDEPGLF LKRKFEYQYQ QQGSKTDREP 
DKIW