Gene Tcr_0018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0018 
Symbol 
ID3760383 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp21893 
End bp22711 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content46% 
IMG OID637784724 
Productpeptidase M48, Ste24p 
Protein accessionYP_390289 
Protein GI78484364 
COG category[R] General function prediction only 
COG ID[COG4783] Putative Zn-dependent protease, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.273769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCTTTA AATCCTTTTT GTTTCCCGTT GTCATATCCA TCAGTACGCT TGGACTGTTA 
AGTTGTAGCG GCGCCACCAC TAAAAAAGGA ACCGTTGGTG TCGAGCGCCA ACAGATGCTC
TTAATTTCCG AAGCTGAAAT GCAGAAAGGG GCTGAACAAG CGTATGGTGA GATTTTAGCG
GAAGCGAAAA AGAACAAAAC CCTCAACACC GACCCGGTGA TGGTCAAACG TATCAGAACG
GTGGCTGATC GACTCATTCC TCAAACCAAA ATCTTTCGTG AAGACGCCCC CAGTTGGAAC
TGGGAAGTGA ACTTAATTAA GTCTGATCAG CTGAATGCCT GGTGTATGCC CGGCGGTAAA
ATTGCGTTTT ATACTGGCAT TATTGTTGAA CTCAAACTAA CGGATGCTGA AATTGCCGCC
ATTATGGGGC ATGAAATTTC CCATGCCTTA AGAGAACATG GTCGTGAACG CGCCTCTCAA
GCGTTGGTCA GCCAAGTAGG CTTAACGGCT TTGAGCATCC TCACCGGAAT GGAAGGCGCT
GCAATGGATG CCAGTAGCAT GGTTGTGCAA ACCACGTTTT TACTGCCTAA CAGTCGAACC
CATGAAACAG AATCTGATCG AATGGGCATT GAGCTTGCAG CACGAGCAGG CTATGACCCT
TATGCGGCGG TCAGTGTCTG GCAAAAAATG GCTAAAATTT CAAAAGATGC GCCGCCTGAA
TTCTTAAGCA CACACCCTTC CAACGAAACA CGAATTGATG ATTTAAAACG ATACGCTCAA
AAAGTGGAAC CGCTGTACCA AAAAACTCAA CAACCTTAA
 
Protein sequence
MSFKSFLFPV VISISTLGLL SCSGATTKKG TVGVERQQML LISEAEMQKG AEQAYGEILA 
EAKKNKTLNT DPVMVKRIRT VADRLIPQTK IFREDAPSWN WEVNLIKSDQ LNAWCMPGGK
IAFYTGIIVE LKLTDAEIAA IMGHEISHAL REHGRERASQ ALVSQVGLTA LSILTGMEGA
AMDASSMVVQ TTFLLPNSRT HETESDRMGI ELAARAGYDP YAAVSVWQKM AKISKDAPPE
FLSTHPSNET RIDDLKRYAQ KVEPLYQKTQ QP