| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0008 |
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| Symbol | |
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| ID | 3760373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 8430 |
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| End bp | 11516 |
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| Gene Length | 3087 bp |
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| Protein Length | 1028 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637784714 |
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| Product | heavy metal efflux pump CzcA |
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| Protein accession | YP_390279 |
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| Protein GI | 78484354 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCGAT TGATTCAGTT TTTCTTAACC CAGCGAATGC TGGTAGTCTT GTTGATTTTC
GGCATTGTCT CCGGTGGTTG GATGGCGTTT CAAAAAACAC CGATTGATGC TTTTCCAGAT
GTTTCACCGG TTCAGGTCAA AATCATCTTT AAAGCGCCCG GCATGACACC CAGCGAGGTC
GAACAACGTG TCATCAACCC GTTAGAGTTG GAATTACTCG GCATTCCGAA TCAAGTCAGT
CTGCGTTCGT TAGGCAAGTA TGCCATTGCC ATCGTTACGC TTGATTTTAA AGAAGGAACC
GATGTCTATT GGGCTCGCCA ACAGGTCTCA GAACGATTGG CGAATGTCGA TTTACCTGCT
GGGGTAATGG GAGGGCTCGC CCCTCTATCA ACCCCTTTAA GTGACATTTT CATGTTCACC
GTTGAAGGAG ACACCCTAAA CAATCAAGAA AAGCGGGGTT TGCTGGACTG GGTGATTCGC
CCCGCATTGC GCTCTGTTCC TGGTGTGGCC GATGTGAATG CAATGGGAGG ACTGGTTAAG
GTCTTCAGTG TTCAGCCTGA CTTTGACAAA TTACAAAGCT ACAAGATTTC ACTCAACACG
CTTACAGATG CCATTCGCCA CAACAACCAA AATGATGGTG CCGGTCGCCT GAATCAAGGC
GAAGAAGTGT TGCTGGTTCG AACAGAAGGC AATCTTACTT CCATTCAAGA TATTGAACAA
ATTGTTATTC GTTATCAAAA TGAAGTGCCT GTGACGGTCA AAGATGTTGC CACCGTTAAA
ATCGATTCGT TATATCGTAA TGGTGCCGTC ACCCAGAATG GCGAAGCCGA AGCGGTGCAA
GGTTTGGTGA TCGGGTTAAG AGGCGCGAAC GCGAAAGAAG TGGTGGCAGA CATTCAACAA
CGTTTGGATG AGATCAAACC GGCCCTACCG GAAGGTATCT CTCTCAGTGT CTTCTATAAC
CGCAGTGATC TGGTGAATAA GGCCATTTAT ACGGTTTCCA AAGCATTAAT CGAAGCGGTG
GTGTTGGTCA TTTTGGTCTT ACTGGTCTTT TTAGGCAATA TTCGTGCCGC GATCACGGTT
GCCTTGATTC TACCCTTAGC CGCATTGATG ACTTTTATTC TAATGAACCT TTATGGCCTT
TCCGCTAATT TGATGTCTCT TGGAGGGTTG GCGATTGCCG TCGGGATGCT GGTGGATGCC
GCCGTGGTGG TGGTGGAAAA CATCGTCACC ACACAAGAAC GCGATAAAGC CAATTTGCCG
AAACTGCATT TGATTTACCG TGCTTTACAA GAGGTCACTG TTCCGGTGGT TTCAGGTATT
CTTATTATCA TGACGGTCTT CCTACCGTTA CTTACATTAG AAGGATTGGA AGGAAAGCTG
TTTGTTCCGG TCGCCTTAAC GATTATTTTC GCTTTGGGTA GCTCATTAAT TTTATCTTTG
ACGGTGATTC CGACCTTGTC GTCCTTTATT TTAGGTAAGC CATCACATAA AGAACCCTGG
TTGGTCAGAA AGCTTTCCAG TGCTTATCGT CCCACTTTAA AATGGAGTCT CGCCAACGAT
AAAATGGTTA TTGGGGGCGC CGTCATTGCG TTAGCGTTTG CGGCCTTTGT CTATACTCAG
GTCGGTAAAA CTTTTATGCC GCAAATGGAT GAAGGAAATA TAATCCTGCA GGTTGAGAAG
ATTCCATCCA TCGGTTTAAA AGAAACGGTG CGAATGGACA TGCGTATCCA AAAACGCCTG
CTAAAAGAAG TACCGGAAAT CACTCGCATC GTCGCACGTG TCGGGTCCGA TGAGCTCGGG
CTGGATCCAA TGAGTTTAAA TGACACCGAT ACGTTCATGG TTTTGAAACC AAAATCAGAA
TGGCGCATGG ATACTAAGGA AGAGCTCATT GCAGACATCC GACGTGTTAT GGAGCAGTTT
TTCCCGGGCA TCAATTTTGC CTTCACGCAA CCGATTCAAA TGCGTGTGGA TGAAATGCTG
ACTGGCTCGC GAGGCGACAT CGCCATTAAA ATTTTTGGTG AATCGCAAGA AGAATTGACG
GCCTTAGCGG ATGATTTAGT GAAACGGGTC GAAAAACTGC CCGGTGCTGT GGATGTTTAT
ACGCCGAAAA ATGACGGATT ACGTTATTTA AAATTGAAGG TGAACCGTTT AATGGCCGGT
CGCTTAGGCC TATCGGTTTC CGAAGTGGAA GACATTCTTC GCACACAAAT CAATGGCATA
ACCGTCGGCA CCATTTATGA AGGCATTCGT CAAACACCGT TAATTATCCG CGGTCCGGAA
GCGACGAAAA CCTCTAAATT GGAAATGCTA CAACAACCCG TCAGTTTAAA AGACGGCCGC
AGCGTTTTAT TAAGTCAGCT GGTGGAAGCT GAAGAAGTCT CCGGACCGGT TTCCATCAGT
CGTGAACAAG GCAAACGCTA TTCCACGGTG ATTGCGAATG TGACTGGACG CGACTTGGTG
AGCTTCGTTG AAGATGCCAA AAAACAAGCC GCTGAAATGG ACACCCCTGC CGGGTATTAT
TTTGAATGGG GTGGGCAATT TGAAAACCAA CAAAGAGCGG CTGCCAAGCT CGCGGTGGTG
GTACCGGTTG CGCTGATCTT AATCTTTATT ATCTTGTTTA GCACCTTCCA GTCTATCGCT
CAAGCATTGA TGGTATTGGT GAATATTCCG TTTGCACTGA TTGGCGGCAT TATGGCGCTT
TGGATCACTG GAGAATATTT ATCGGTGCCG GCCTCGGTCG GATTTATCGC ACTTCTGGGG
ATTGCTGTTT TGAACGGGGT TGTGATGATT AGTTACTTTA ACCAACTGGT TGCAAATGGG
TTGACGGTCG CTGAAGCCGT TGTCGAAGGC GCCTTAAGGC GACTCCGCCC TGTGTTAATG
ACCGCTTCAA TTGCCGCACT CGGCTTGCTT CCTTTAGTGT TTGCAACAGG CGCCGGCTCG
GAAATTCAAC GCCCCTTGGC CATTGTGGTG ATTGGAGGGC TGATTACCTC GACCTTATTA
ACACTGATGA TTTTACCGAT TATCTATCAA CGATTTGGGC TGAAATCTTT GGGACTACCC
TCTGAATCAC AGGAGTCAAA CGCATGA
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| Protein sequence | MSRLIQFFLT QRMLVVLLIF GIVSGGWMAF QKTPIDAFPD VSPVQVKIIF KAPGMTPSEV
EQRVINPLEL ELLGIPNQVS LRSLGKYAIA IVTLDFKEGT DVYWARQQVS ERLANVDLPA
GVMGGLAPLS TPLSDIFMFT VEGDTLNNQE KRGLLDWVIR PALRSVPGVA DVNAMGGLVK
VFSVQPDFDK LQSYKISLNT LTDAIRHNNQ NDGAGRLNQG EEVLLVRTEG NLTSIQDIEQ
IVIRYQNEVP VTVKDVATVK IDSLYRNGAV TQNGEAEAVQ GLVIGLRGAN AKEVVADIQQ
RLDEIKPALP EGISLSVFYN RSDLVNKAIY TVSKALIEAV VLVILVLLVF LGNIRAAITV
ALILPLAALM TFILMNLYGL SANLMSLGGL AIAVGMLVDA AVVVVENIVT TQERDKANLP
KLHLIYRALQ EVTVPVVSGI LIIMTVFLPL LTLEGLEGKL FVPVALTIIF ALGSSLILSL
TVIPTLSSFI LGKPSHKEPW LVRKLSSAYR PTLKWSLAND KMVIGGAVIA LAFAAFVYTQ
VGKTFMPQMD EGNIILQVEK IPSIGLKETV RMDMRIQKRL LKEVPEITRI VARVGSDELG
LDPMSLNDTD TFMVLKPKSE WRMDTKEELI ADIRRVMEQF FPGINFAFTQ PIQMRVDEML
TGSRGDIAIK IFGESQEELT ALADDLVKRV EKLPGAVDVY TPKNDGLRYL KLKVNRLMAG
RLGLSVSEVE DILRTQINGI TVGTIYEGIR QTPLIIRGPE ATKTSKLEML QQPVSLKDGR
SVLLSQLVEA EEVSGPVSIS REQGKRYSTV IANVTGRDLV SFVEDAKKQA AEMDTPAGYY
FEWGGQFENQ QRAAAKLAVV VPVALILIFI ILFSTFQSIA QALMVLVNIP FALIGGIMAL
WITGEYLSVP ASVGFIALLG IAVLNGVVMI SYFNQLVANG LTVAEAVVEG ALRRLRPVLM
TASIAALGLL PLVFATGAGS EIQRPLAIVV IGGLITSTLL TLMILPIIYQ RFGLKSLGLP
SESQESNA
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