Gene Tcr_0006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0006 
Symbol 
ID3760371 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp6102 
End bp7295 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content45% 
IMG OID637784712 
ProductOuter membrane protein-like 
Protein accessionYP_390277 
Protein GI78484352 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.00129905 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCAA TACTGGTCTT TTTAAGCGCA TGGACTTTAA GCGCTAATGC TTGGGCGGTG 
ACCTACAGTG ACTTACTTCC CAATGTCATT AATCAATTGC CACAAAAACA AGAACTGATC
GATTTCCAAG CCCTATCCAG CGCAAACCAA ACCGCCGCCG ACAGTTGGGT GGCAGGCGAT
ATCGCACTGA GTTTAAAACA TGAAAACGAT GCCTTAACCG GAAACCAAGG GTTCGAATCT
TGGGAAGGCG GTGCGCGTTT TCCGATTTGG TTACCAGGCC AATCCAGCAG TCGCCAACAA
ATCGGTAACG CTTACCAATC TTTAAACCAA GTTGGCCGAC AACACATCCA GCTTCTGGCT
TCCAAACAAC TTCGTCAGTT AGTCTGGCAA ACAAAAAAAG CCAAAGTCAG TCTTAAGTTT
GCTTATAAAG ATTTAAAACA AACTCAAACC TTAGTGGCGT TGGTGTCTCA AAAAGTTGAC
GCTGGAGAAA GCCCAAAATT TGATTTGCTA CTGGCTCAGA AATCCTTATT CAAAGCTCAA
AAAAATGTCG CTCAGAAAGA AGCGACTTAT CAAGTGGCTT TGCAAAACTA TACCCAATGG
ACCCAACAGA CCGATTTACC GTCTCCGTTA GCTGAAACGC TGGCGTCACA AACCCTGACA
CTGGAGCAGC ATCCGGATTA TCAAATGATG CAGGCACAGG TTCAAGCGGA ACAAGCCAAA
CTCGAACTGA CCAAAGCCAG TCAGCGTAGC AACCCGAGCG TGTATGTGGG CGCCAAGAAT
GAACGTGATA AGCAGACTTC AGACAATAGT ATTTTAATTG CCGAAGTCAG TTTCCCGATT
GGTGCTGACC CTACCGCACC GTCACGTATT GCGGAACAAC GCCAAGCGGT ATCACAACGC
CAAATTGCAC AAAACCAAGC CAAACAACAA TTACAACTGA ACTTGATTCG TGCCAAAGAA
GCTTGGGTGT CTGCTCAGAA AACCGAACAG CTCTCTCAGC AACAAAATAC CTTGTCTGAA
GAAGCCATGC AACTGGCCAA AATGGCGTAT CGACAAGGCG AAACGTCGAT TCAAAATTTA
CTGCTGATGA AACAACAATA TTTTGAAGAT AAATTAAATT TTAAATTAGC CCAATTGAAT
CGTTTAGAAG CGATTGCCAA TCTGAATCAA GCCCTAGGAG TGAGCCTAAA ATGA
 
Protein sequence
MKAILVFLSA WTLSANAWAV TYSDLLPNVI NQLPQKQELI DFQALSSANQ TAADSWVAGD 
IALSLKHEND ALTGNQGFES WEGGARFPIW LPGQSSSRQQ IGNAYQSLNQ VGRQHIQLLA
SKQLRQLVWQ TKKAKVSLKF AYKDLKQTQT LVALVSQKVD AGESPKFDLL LAQKSLFKAQ
KNVAQKEATY QVALQNYTQW TQQTDLPSPL AETLASQTLT LEQHPDYQMM QAQVQAEQAK
LELTKASQRS NPSVYVGAKN ERDKQTSDNS ILIAEVSFPI GADPTAPSRI AEQRQAVSQR
QIAQNQAKQQ LQLNLIRAKE AWVSAQKTEQ LSQQQNTLSE EAMQLAKMAY RQGETSIQNL
LLMKQQYFED KLNFKLAQLN RLEAIANLNQ ALGVSLK