| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3718 |
|---|
| Symbol | |
|---|
| ID | 3758705 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 3677866 |
|---|
| End bp | 3680346 |
|---|
| Gene Length | 2481 bp |
|---|
| Protein Length | 826 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637784640 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_390206 |
|---|
| Protein GI | 78358757 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system
[COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCAGAAA AGGCGCCTGA TGGTACCATT TGGTACCGTA TTGCGCCGGA AGAATTCCGG
TGTGTGAATG TCTTGCACCG GCGGGGCTTT TGTGGTTCTG CCGTGCGGAT GTTCCGCGCA
AATGCTGTGT GCGTGCGGCG CGCTGCGTGT TATTGCTGCG CCGGCCACAT GCAGGGGAAT
ACCATGCATA AAAAGACATC CCCCCGCCGG TTCGGTCTGG TGTACCGCAT CGTGCTGACC
ACGGGTGTGA CGCTGCTTAC AGGGCTTGTG GCGCTTTCCT GGTTTAACAT GCGCTACCAT
CAGCGTCATG CCATGCGCGA ATTTGCCGAA GGCGCGGACA GGCTGGGCAG TACCATTCTG
CTGGGCACGC GCTATGCCAT GATGACCAAC GCCCGCCATG AGCTTGATCA GATCATACGC
GATCTGGCCC GTCAGCCCGA CATCCATTCC ATCCGTATTT ACAATAAAGC CGGAGCCATC
ATGTTTTCCA GTCAGGCCGA CGAGGTCGGA CGGGTGACAA ACATACGTGA TGAAGCCTGC
AATGTCTGCC ACCACACCGA GCCGCCGCTG ACCCGGCTGG CTCTTTCTGA AAGCACCCGC
CGCTTTACCG GTGCGGACGG AGAACCTCTG CTGGGCAGCC TGCGGCCCAT CATGAATGAA
GAAGGCTGTT CCGGCGGGCC GTGCCATGTG CATTCTGCCG ATAAACAGGT GCTCGGCGCA
CTGGACGTGG TGATGCGCCT TGGTCCTGCG CAGCTGGACT TTGCCCGTTT CCAGCAGGGG
ATGGTAGGTG CCACGGCAGT GGTCTTTCTG CTTTCTGCTT CGGCCATTGT GCTGTTGCTG
CGGCGGTTTA TCACGCAACC TGTTTCGCGC CTGAAGGAAA ACACCAGACG CATAGGCAGG
GGCGAGCCGG TGCTGATAAC GGATGCAGGC CAGCATGACG AGATAGGAGA GCTGGCCGGC
GCGGTGCAGT CCATGGCCGA TGATATCCGC CAGAAGCAGG AAGAACTGTT GCGGCAGCGG
CGGGAATATC AGGCGCTGTT TGAGCAGGTG CCGTGCAGCA TCACCGTGCA GGACAGAGAA
TACCGTCTGT TGCAGTTCAA CAGGGAATTT GCAGAGCGCT TTCACCCGTT GCCCGGTGCG
TTCTGCTATC AGGCGTATAA AGGCCGCACA GACCCCTGTC CCAATTGTCC TGTGGAACGT
ACATTTGCCA CGGGCAGGTC GCATTGCAGC GAAGAATACC GCACCAATCC GGATGGTTCC
AGAACACACT GGCTTGTGCA TACCTCTCCT GTTGTGGATG AAAACGGGCA GGTGACAGCA
GCCATGGAAA TGTCCATTGA CGTTTCGGCG CTGAAAAAGG CCGAAGACAG GCTGCGTCGC
TCGGAACAGA AATATCACGC CATCTTCAAT AACATTCCCA ACGCCGTGTT TGTACTGGAT
GCGCAGACGC TTGATATTGT TGACTGCAAC CATACCGTGG AAACCCTGTA CGGTTATGAA
CGCAGCCAGC TGACCGGTAT GTCGTTTCTT GACATGTTTC CCGAAGAGGA GCGCAGGCGG
TACGCATCGC AGCTGAAAGC ATTTACTGTA CTTCCCCGGG CCCGCAATCA TCGCAAGGAC
GGCAGCATGT TGTATGTCGA CATCATGCTG TCGCCCGCAG AATACCATGA GCGTACAGTG
CTGCTGGTGG CTGCCAGCGA TGTGACCGAA CGGCTGGAGA CCGAACAGAA GCTGATTCAG
GCCGGAAAAA TGGCTACACT GGGTGAGATG GCAACCGGCG TGGCACATGA ACTGAACCAG
CCGCTGACTG TCATTAAAAC CGCGAGCAGT TTTATCATGC GCAAAATACA TCGCGGTGAA
CCAGTGGCAC CCGATGTGCT GGAAACCATG GCGCGCGAAA TAGACAGCCA TGTGGACAGA
GCCAGCGGTA TTATTAATCA TATGCGGGAC TTCGGCCGCC AGTCGGATAT CACGCTGGAA
CCGGTAAATC TCAATGCTGT TCTGCAGTCA TCGTGCGAGT TTTTTGCCCG CCAGCTTTCT
TTGCGGCAGA TTGAAGTGGA CTGGCAGCTG GCCGAAGTTC TGCCGCCGGT CATGGCCATG
CCTAACAGGC TTGAACAGGT GTTCACAAAC ATGCTGCTCA ATGCGCGTGA TGCCATTGAA
GAGCGTTCGG AGCGCGATCC TAATGCCCCG CGCCGTATCA CCGTGCGCAC AACGGTGGAA
GACAGAGAGG TTGTGGTGCG TGTGTGCGAC ACAGGCAAGG GGATTCCCCG TTCGCTGCTT
AACAAGATAT TCGAACCGTT TTTCACTACC AAAAGCGTGG GCAAGGGAAC GGGACTCGGT
CTTTCCATCA GCTACGGGCT GGTGAAAGAT TTCGGTGGTA GCATACAGGC GGCAAATATG
CCGGAAGGCG GCGCCTGTTT TATTCTGCGG TTTCCTTCCA CCAGCTCTCT GCCCGCCGGG
TCTGAGAGCG CTGCAACATA A
|
|---|
| Protein sequence | MPEKAPDGTI WYRIAPEEFR CVNVLHRRGF CGSAVRMFRA NAVCVRRAAC YCCAGHMQGN
TMHKKTSPRR FGLVYRIVLT TGVTLLTGLV ALSWFNMRYH QRHAMREFAE GADRLGSTIL
LGTRYAMMTN ARHELDQIIR DLARQPDIHS IRIYNKAGAI MFSSQADEVG RVTNIRDEAC
NVCHHTEPPL TRLALSESTR RFTGADGEPL LGSLRPIMNE EGCSGGPCHV HSADKQVLGA
LDVVMRLGPA QLDFARFQQG MVGATAVVFL LSASAIVLLL RRFITQPVSR LKENTRRIGR
GEPVLITDAG QHDEIGELAG AVQSMADDIR QKQEELLRQR REYQALFEQV PCSITVQDRE
YRLLQFNREF AERFHPLPGA FCYQAYKGRT DPCPNCPVER TFATGRSHCS EEYRTNPDGS
RTHWLVHTSP VVDENGQVTA AMEMSIDVSA LKKAEDRLRR SEQKYHAIFN NIPNAVFVLD
AQTLDIVDCN HTVETLYGYE RSQLTGMSFL DMFPEEERRR YASQLKAFTV LPRARNHRKD
GSMLYVDIML SPAEYHERTV LLVAASDVTE RLETEQKLIQ AGKMATLGEM ATGVAHELNQ
PLTVIKTASS FIMRKIHRGE PVAPDVLETM AREIDSHVDR ASGIINHMRD FGRQSDITLE
PVNLNAVLQS SCEFFARQLS LRQIEVDWQL AEVLPPVMAM PNRLEQVFTN MLLNARDAIE
ERSERDPNAP RRITVRTTVE DREVVVRVCD TGKGIPRSLL NKIFEPFFTT KSVGKGTGLG
LSISYGLVKD FGGSIQAANM PEGGACFILR FPSTSSLPAG SESAAT
|
|---|
| |