Gene Dde_3628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_3628 
Symbol 
ID3758615 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp3592267 
End bp3593352 
Gene Length1086 bp 
Protein Length361 aa 
Translation table11 
GC content62% 
IMG OID637784550 
Productsecretion protein HlyD 
Protein accessionYP_390116 
Protein GI78358667 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACAAGC CTGCACCCAT GATTCGTATC CCGTCTCTTA TAGCGGTTTT ACTCGTTTTC 
TTGCAAGTCT ATAACGCCGC TGCCGCCGCA GACGGAGAAA AAAGACAGGC CCCCCCGCCG 
GCACAGGTGG TCACGGCCCA TGCGCGCTCC GGCGAAGCAA GCCCCCATGC GGAATACATC 
GGCACTGTGG AATTTCCCGA AGTGTCCGCC GTGGCATCTG AAGTGGGCGG ACGGGTTGCC 
TCTGTAAGCA TAGAGGAAGG CAGAAAGGTG CGGCGCGATG AACAGCTGGC CGTCATCGAC 
AGCCAGCTGC TGTCAAAAGA CTATCAGTCG GCCGTGGCGC AGCACCGCAC CGTGCTTGCC 
GATCTGGAAA ACGCCGCGCT GGAACTGGAG AGACTGGAAA CCCTGCGCGA ATCGCGTTCC 
ATCTCGGAAC AGCAGTATGA TGTGGGCAGG TTCAAGGAAG CAGGGCTGCG CCGTAAAGCT 
GAATCGCTGA AGGCGGAAGC CGAACGGCTG GCAATCCAGA TAGGAAAATG CGTCATACGT 
GCTCCGTTTG ACGGCATTGT ACTGGAAAAG CTGAGCAGCC CCGGCGAATG GGTTTCGCCG 
GGAACCGTTG TGGCCAGACT GGCCAGAACC GATGCCATGG ACGTACGGGT TTCCGTACCG 
GAAGCGGTGC TGCCGTTTGT CACCGAGGGA CGCAAGGTGG TTGCGCGCAC GGGCCAGCAG 
GAATACGAAG GACACGTCAC GGCTGTCATT CCGCTGGGCG ATGTGGCCAC AAGAACCTTC 
CCCGTCAAGG TACGGCTCAA ACGCACCGAC GGGCTGGCGC AGGGCATGCA GGCCCGCGTG 
GGGCTGCCCA CGGATGAGGC GCGTCCCGCC GTGCTGGTGC CCCGCGATGC CGTTATCCGC 
TCCGCCGGAC GCATGGTTGT CTGGACAGTG CAGAACGGCA CCGCCGTGCC TGTGGATGTG 
GTGGTCAACG CATGGCTGGG GCTGGATGCC GCCGTGGCCG GCAAAGGTCT TGTGCAGGGC 
TCTGAAGTGG TGATCAAAGG CAACGAACGG CTGCGTCCGG GCCAACCTGT CACGGCTGCC 
CGCTGA
 
Protein sequence
MHKPAPMIRI PSLIAVLLVF LQVYNAAAAA DGEKRQAPPP AQVVTAHARS GEASPHAEYI 
GTVEFPEVSA VASEVGGRVA SVSIEEGRKV RRDEQLAVID SQLLSKDYQS AVAQHRTVLA 
DLENAALELE RLETLRESRS ISEQQYDVGR FKEAGLRRKA ESLKAEAERL AIQIGKCVIR 
APFDGIVLEK LSSPGEWVSP GTVVARLART DAMDVRVSVP EAVLPFVTEG RKVVARTGQQ 
EYEGHVTAVI PLGDVATRTF PVKVRLKRTD GLAQGMQARV GLPTDEARPA VLVPRDAVIR 
SAGRMVVWTV QNGTAVPVDV VVNAWLGLDA AVAGKGLVQG SEVVIKGNER LRPGQPVTAA 
R