| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3417 |
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| Symbol | |
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| ID | 3758394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 3378588 |
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| End bp | 3381395 |
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| Gene Length | 2808 bp |
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| Protein Length | 935 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637784329 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_389905 |
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| Protein GI | 78358456 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACGAGA CTCCTCAAAT CTCAGCCCGA CACTGTGGCC AGATTAACCA GAATGCCCAT
TTTGGCAGTT GGCATCTCGA TCTTGGCTCG CAACTCCTCA CTTGCTCCGA TGAAGCCTGC
CGCGTGCTCG GCCTGGATGT TGGTGCGCCA ATAGCCTTCG AGCGATTCCT GCAGTGCATT
CACCCTGAAG ACCGCCCCCT CTTCGATAGG GCATGGGATG CTGCCATGTG CGGAAAGTCC
CTTGATCTGC GGTATCGCAT CGTCAGCGGA GGGCAGGTTC GCTGGATACA CCTGCGGGCA
ACATTCAAGG GCGACGCCTC TGGTCGGCCC AGAGCGGCAG ACGGGACGGT AGAGGACATC
ACCGATCTCA AGAGGGTCGA GCAGGCGCTG AACTCTATGC GCCGACAGCG AGAAGAGTTA
GCCAGCCACG TTCCCGGTAT GCTTTACCAA TACCGTCTTC GTCCGGACGG CAGCTCGCAC
TTCCCTTATG CCAGCGCGAG GATACAGGAA ATATACGGGG TTGCACCGGA GGATGTTGTT
GAAGATGCCA CTCCTGCGTT CGCTGCGCTC CATCCTGAAG ACCGCGACCG TGTGCATGAA
ACCATACAGG CGTCGGGGCA GTCACTCGCG CTTTGGCATG ACGAGTACCG AGTGCAGTTT
CCAGACGGTC GGGTGATCTG GGTCGAAGGC GAGGCGTCGC CTGAAGCCAT GCCTGATGGG
AGCATCCTCT GGCACGGCTA TATCCATGAT GTCACCTCAC GCAGAAGATC CGCGGAAGAG
CTTCGCCTTG CGGCTAAAGT TTTTGAGCAC GCAGGAGAGG GCATCCTCAT TACGGACGCT
CAAGGCCACA TTGTCAACGT CAATCGGGCG TTTTCCGTGA TCACTGGTTA TGCGCGGGAG
GAAGTAATGG CTCAGACACC TCGTCTGCTC GAGTCCGATC GCTATGACGA TGAGTTCTAT
CAGACCGTTT GGCAGGCTCT GCGTGAGCAC GACTATTGGC ACGGAGAGCT CTGGTGCCGA
CGCAAGAACG GCAGTCAGTT TGCCGCGCTG CTGACGATCA GTGCAGTCCC GGATATGCGG
GGCAATATCG AGCATTATGC AGCCATGTTT TCCGACATCA CAGCGCTGAA GGAGAACCAG
CAACAGCTTG AACGCGTTGC TCATTACGAC CTGCTCACCG GCTTGCCCAA TCGACTATTG
CTTGGAGACC GCCTTAAGCA GGCCATTCGT CAGACACGTC GGCGTGGCAT GCACCTGGCG
GTTGTCTTCA TCGATCTGGA TGGATTCAAG GAGGTCAACG ACCAGCACGG CCACGCAGTC
GGCGACAAAT TGCTTTCCGT CCTGTCCAGG CGTATGACGC AGGTGTTGCG CGAAGACGAT
ACCTTGGCCC GTCTTGGTGG TGATGAGTTT GTCGCTGTTC TGCTCGACCT GCCGGATATT
TCCGTCAGCG TACCGATTCT CGATCGCCTG ATCGAGGTGG CTGCACAGCC CGTACCGATT
GGTGACGCAC TGTGCGAGGT GAGCGCGAGT ATCGGTGTGA GCTACTACCC GCAAGGCGAA
GATATCGACG CCGACCAACT ACTGCGGCAG GCAGATCAGG CTATGTATCG TGCCAAGCAA
GCCGGCAAGA ATCGATATCA CGTTTTCGAT ACGGAGAAGG ATCGTACGCT GCGCACCCGT
CACGAAGAAT TGGACAGCAT AGAGAAGGCA CTTGCCAATG GGCAGTTTCT GCTTTATTTC
CAACCCGAGG TCAACATGCG CACCGGTGAG GTGCTGGGCG CCGAAGCCTT GATCCGCTGG
CAACATCCGA CGCGTGGCTT GTTATCTCCT GCCTCCTTCA TACCCATCAT TGAGAACCAT
CCGCTCGGGA TTGACGTGGG GGAATGGACC ATCGAGGCTG CGCTGACCCA GATCGAAGTT
TGGCGCAAGG CCGGCCTTCA TGTCCCGATC AGCGTGAATA TCGGTGCGCG GCACTTGCTG
CAACCGGACT TCATCATGCA TCTACGGGGT ATGTTGTCAC GACATCCCGG CGCCCAGCCG
CAAGACCTTG AACTGGAAAT CCTCGAAACC AGCGCCGTGG AGGACTTCGT TCAAGTGTCT
CAGTTGATGG CGCTGTGCGG GAGGATGGGA TTGCGTTTTG CCCTCGACGA TTTCGGCAGC
GGCTATTCAT CGCTGACCTA TCTGAAGCGC CTGCCCGCGC ACCTACTCAA GATCGACCAA
GATTTTATAC GCGACATGCT CGAGGATCCG GACGATATCG CCATCCTGGA TGCGCTACTG
GCACTGGCAA GGTCGTTTGG CAGGAACTGC ATCGCGGAGG GAGTCGAATC CATTCAGCAT
GGTGAAATGC TGCTGCGTAT GGGATGCGAG TGGGGCCAGG GTTATGCCAT CGGGCATCCG
ATGCCGGCGC ATGAATTCGA GCAATGGCTA CACACCTGGC AGGTACCCTT ATCCTGGAAG
GGATTCAAAC CTGACAGTCG CTCCGCGCTG CCCGTGCCGT TCACATACGT CGACCACCGG
GTCTGGATTT CCCAGATGAT CGACTATCTG TCAGGTAAGA CCCAAGTGCC GCCTCAACCC
GAAGCACTCC AATACTGGCG GGATCAAAGT GGCCGCCCTA CGTTCTTCGG CAAGGATCCT
GATGATCAGG TCGATGTCCT GCATCAGAGC ATCCAGCAGT TAGCGCACAC CCTGAGTGAA
ATGAAAAATG CCGGTCGTGT CGAGGCATTG AGGGCTGGCA TCGACAAGTT GCAACATTTG
CAGGCGGATC TGCTGGGATT GCTGCCGCCA GACCAGAATC CGGATTGA
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| Protein sequence | MNETPQISAR HCGQINQNAH FGSWHLDLGS QLLTCSDEAC RVLGLDVGAP IAFERFLQCI
HPEDRPLFDR AWDAAMCGKS LDLRYRIVSG GQVRWIHLRA TFKGDASGRP RAADGTVEDI
TDLKRVEQAL NSMRRQREEL ASHVPGMLYQ YRLRPDGSSH FPYASARIQE IYGVAPEDVV
EDATPAFAAL HPEDRDRVHE TIQASGQSLA LWHDEYRVQF PDGRVIWVEG EASPEAMPDG
SILWHGYIHD VTSRRRSAEE LRLAAKVFEH AGEGILITDA QGHIVNVNRA FSVITGYARE
EVMAQTPRLL ESDRYDDEFY QTVWQALREH DYWHGELWCR RKNGSQFAAL LTISAVPDMR
GNIEHYAAMF SDITALKENQ QQLERVAHYD LLTGLPNRLL LGDRLKQAIR QTRRRGMHLA
VVFIDLDGFK EVNDQHGHAV GDKLLSVLSR RMTQVLREDD TLARLGGDEF VAVLLDLPDI
SVSVPILDRL IEVAAQPVPI GDALCEVSAS IGVSYYPQGE DIDADQLLRQ ADQAMYRAKQ
AGKNRYHVFD TEKDRTLRTR HEELDSIEKA LANGQFLLYF QPEVNMRTGE VLGAEALIRW
QHPTRGLLSP ASFIPIIENH PLGIDVGEWT IEAALTQIEV WRKAGLHVPI SVNIGARHLL
QPDFIMHLRG MLSRHPGAQP QDLELEILET SAVEDFVQVS QLMALCGRMG LRFALDDFGS
GYSSLTYLKR LPAHLLKIDQ DFIRDMLEDP DDIAILDALL ALARSFGRNC IAEGVESIQH
GEMLLRMGCE WGQGYAIGHP MPAHEFEQWL HTWQVPLSWK GFKPDSRSAL PVPFTYVDHR
VWISQMIDYL SGKTQVPPQP EALQYWRDQS GRPTFFGKDP DDQVDVLHQS IQQLAHTLSE
MKNAGRVEAL RAGIDKLQHL QADLLGLLPP DQNPD
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