| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3233 |
|---|
| Symbol | |
|---|
| ID | 3758208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 3221869 |
|---|
| End bp | 3225324 |
|---|
| Gene Length | 3456 bp |
|---|
| Protein Length | 1151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637784144 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_389722 |
|---|
| Protein GI | 78358273 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.885558 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGAA CCGCAAACCA TGTTTTCCGG CACGCACCAT GCCAGCCGGC CACGCCGCGC
CGTGCAGTCT GCGCAACGGC GGTGTTTGTG CTGTTCCTGC TTGTTACCGT ATTCTGGGTC
TCCACCGCCT GTGCCCAGCA GGACAGACGG CGCAACGTTC TTTTTCTCAA TTCATACCAC
AACGGGTATT CGTGGTCGGA CAAGATTCTG GAAGGGGTCA AGGATGTCTT TGCCGCGCAG
GACAGATACA ACATCGTGCT GCAGGTCGAA TACATGGACT CGAAAAAGTT TCATTATGAA
GACACCGTGC AGACCCTCTT CAGATTGTAC CGCGATAAAT TCCGCGGCAA GCATTTTGAT
GTCATAATAT CTTCCGACAA TATCTCATTC AACTTTCTGC AGCAGTTCCG CGACACGCTC
TTTCCCGGGG TTCCCGTCAT TTTCAGCGGG CTGAACGACT TCCACCGCGA AGGGCTGTCT
CTTAAAGGAT ATTCCGGCGT TACAGAAGAA TACGACGTGG CCGCCAACCT TGAGCTGGCC
ATGCGGCTGC ACCCGCAGAT GAAACGCATG GTCGTCATCG GCGATACGTC GGTAACCGGC
GTGGCCATCA GCAACCAGAT CAAAAAAGCA CTGCCCGTGG TGCAGGACAA GCTGGAAGTT
GAATTCTGGT ACGAGTACCG GCTGGAAGAC ATGCTGAACA AAGTGCGTCA TCAGGGGCCG
GACACATTTT TCTACTTCAT CCCCATGTAC CGCGACATCG ACGGCCAGTT TTATTCCGCG
CAGGAACTGC TGGAAAAAGT TCATGCCAAT TCCGACGCGC CCCTTTACTC CAACTGGGAA
TTTCTGCTGG GCCACGGCAT TGTGGGCGGC AAGCTGATTT CCGGCGTGCG CCACGGCATG
GTGGCCGCGC GCATGGCCAT GCAGGTGCTG GACGGCACAC CGGTGGACGA CATTCCCATC
ATGTCCGACC CCGAAGCCGC AGACAGCGAA GCATTTATCT TTGACTACAA TGAGCTGCGC
CGTCTGTTCA TCACGCAGGA ACAGCTGCCC GCAGGCGCAC GTCTGATCAA CGAGCCCAGC
CGCTTCTACG AGCTGAACAA GCAGGTTTTC TGGACCATCA TCATCTCCAT GGTGCTGCTT
TCCGTCATTC TGGTGGTGCT GGTGATGAAC ATACTGGAAA AGCGCCGTGT GGAGCAGAAA
ATCAAAGATC AGCTGTCTTT TCTGCGGCTG CTTATGGATA CCATTCCCCT GCCCATCTTC
ACCAAGGACA CCACGGGCAG TTTTCTGCAG TGCAACAAAG CGTTTGAAGA CTTTTTCGGG
GTGGACCGCC AGAGCCTGCT GGGCCTTGCC GGCAATCCGG ACAATCTGGC GGTACGCGCT
CTGACCGATC CTGTGGACGT GGACATGCTG CGCAGACCCA GCGTGGAAAT CTACGACAAG
ACCATCGAAG GCCCCGACGG CCTGCCGCGC AACATCATCC TGCACAAGGC GACGCACAAC
AACGCCCGCG GCGAAGTGGT GGGACTGGTG GGAGTGGTTT TTGACTACAC GGCCCGGCGG
CGTGCCGAAG ACAGTCTGCG TGCCGCGGAA GAAAAATACC GTTCCATCTT TGAAGGCTCG
CCGCTGGGTA TTTTCCGCAT CCGCCCCAGA GACAGCTTCA TCGATCTCAA CCCTGCGCTG
GCGCGCATGG CCGGGTTTGA AAATCCGGAC CAGCTTGTGC AGACCCTGCC GCAGGATATC
GACCGGCTGC TGGAGCAGAT GGCCGCCACA AGCTCATCTT CCGGCGATGT GATAGACTTT
GAACACACGT TCACCAGAGG CGACGGCACA GCCATAACCG CCCACATAAC CCTGCGTGTG
GCACGCGACC GCAACGGCGA TATCGTGCTG CTGGAAGGAT ACGCCGAAAA CGTCACCCAG
CGGAAACTGG CGGAACAGGC CCTCAGCGAA TCACAGCGCA TGCTGCAGCT GGTGCTTGAT
AACATTCCCC AGCTGGTAAG CTGGAAAGAC GCCTCGCTGC GGTACATCGG CGCAAACCGT
TCCTTTGCCC AGTTTTTCGG CATTGCCGAA CTGGAAGACG CCATAGGCCG CACCGACGTG
GAAATTCTGC CCGATGAAGC GCAGGCGCTG CGTCTGCGTG AAGAGGACGA GGAAGTCATC
CGCAGCAACA CGCCCCGTTA CCGCTATAAA TGGTCCACCA CGGCGGCCGA CGGAAAAAGT
GTATGGCTGG AAACCAACCG CGTGCCGCTG CATGACGAAC AGGGCCATGT GGTGGGCCTG
CTGACCACGG CGGAAGACGT GACCCAGAAG ATAAATCTGG AACGCCAGCT GCTGCAGTCG
CAGAAAATGG AAGCCATAGG TACGCTTGCA GGCGGCATAT CTCATGACTT CAATAATATA
CTGACTTCGA TCATCAACTC CGTTGAACTG GCACTGAGTG ATGTCGAGGC GGCTTCCATC
ACATTCAACG ACCTGATGCG TGCCCTGAAG GCCGCACAGC GCGGCAGCCA TCTGGTCAAA
CAGATTCTCA CGTTCAGCCG CCCGTCTGTG GAAGGTTTTG TGACCACCGA CATCAACGAA
GCCCTGAACG AAGCCGTGGG GCTGATCAAG GCATCACTGC CCCGCAACAT AGAAATACGC
CTCGCGGTAC CGCCACGCCC CTCGTTTATC CATGCCGACC CCACACAGAT ACATCAGGTT
ATCATGAATC TGTGCACCAA CTCGTTTCAG GCATTGCGCG AAACAGGCGG TGCCATGGAC
ATCAATCTGG AACAGGAACC GGTACCGGAA GAAACGGCGC AGGAACTGGC CATATCAGCG
GGCAACTACC TCAAGCTTAC TGTCAGCGAC AACGGCCCCG GCATCCCGCA GGTAATTCTG
GATAAAATTT TTGATCCGTT TTTCACCACC AAAGGCAAAA CCGAGGGAAC AGGTCTGGGA
CTGGCCGTGG TGCACGGCAT TGTCAAAGCG CACCGCGGCG CTGTGCGCGT CAGCTCCGAC
CCCTTCCGGC GCACTGCATT CGAGGTCTGG CTGCCCATGC TTGACGCCGA AGGCGCCCCG
CTGCCCATTT CCGACGCGGG AGACCTGCGC GGGGGCGATG AACGCATTCT GTTTGTGGAA
GACGACGACG ACCAGCTGCA CACCATACCC CGTGTGCTCG AATCGCTGGG GTTCACCGTG
CGCGCGCTGA AAAGCCCCTC GCATGCCGCA CAGCTGCTGC GCGAAAATCC TTCGGCCTAC
GATCTGGTCA TAACCGACTT TGACATGCCG GAAACCAACG GCCTTGAACT GGCGGACGAA
ATCGGCGATA TTGCCCCCCG AGTTCCCGTC ATCATGGTCT CCGGCCGCGA CGTGGCCGCA
GAAGGCGCGC TGGCATTTCC CAACATCAAA GCCATTGTTC CCAAGCCGTA CAACCGCAAC
ATCCTTTCCG AAACCATCCG CAAGGTTCTC GGGTAA
|
|---|
| Protein sequence | MTRTANHVFR HAPCQPATPR RAVCATAVFV LFLLVTVFWV STACAQQDRR RNVLFLNSYH
NGYSWSDKIL EGVKDVFAAQ DRYNIVLQVE YMDSKKFHYE DTVQTLFRLY RDKFRGKHFD
VIISSDNISF NFLQQFRDTL FPGVPVIFSG LNDFHREGLS LKGYSGVTEE YDVAANLELA
MRLHPQMKRM VVIGDTSVTG VAISNQIKKA LPVVQDKLEV EFWYEYRLED MLNKVRHQGP
DTFFYFIPMY RDIDGQFYSA QELLEKVHAN SDAPLYSNWE FLLGHGIVGG KLISGVRHGM
VAARMAMQVL DGTPVDDIPI MSDPEAADSE AFIFDYNELR RLFITQEQLP AGARLINEPS
RFYELNKQVF WTIIISMVLL SVILVVLVMN ILEKRRVEQK IKDQLSFLRL LMDTIPLPIF
TKDTTGSFLQ CNKAFEDFFG VDRQSLLGLA GNPDNLAVRA LTDPVDVDML RRPSVEIYDK
TIEGPDGLPR NIILHKATHN NARGEVVGLV GVVFDYTARR RAEDSLRAAE EKYRSIFEGS
PLGIFRIRPR DSFIDLNPAL ARMAGFENPD QLVQTLPQDI DRLLEQMAAT SSSSGDVIDF
EHTFTRGDGT AITAHITLRV ARDRNGDIVL LEGYAENVTQ RKLAEQALSE SQRMLQLVLD
NIPQLVSWKD ASLRYIGANR SFAQFFGIAE LEDAIGRTDV EILPDEAQAL RLREEDEEVI
RSNTPRYRYK WSTTAADGKS VWLETNRVPL HDEQGHVVGL LTTAEDVTQK INLERQLLQS
QKMEAIGTLA GGISHDFNNI LTSIINSVEL ALSDVEAASI TFNDLMRALK AAQRGSHLVK
QILTFSRPSV EGFVTTDINE ALNEAVGLIK ASLPRNIEIR LAVPPRPSFI HADPTQIHQV
IMNLCTNSFQ ALRETGGAMD INLEQEPVPE ETAQELAISA GNYLKLTVSD NGPGIPQVIL
DKIFDPFFTT KGKTEGTGLG LAVVHGIVKA HRGAVRVSSD PFRRTAFEVW LPMLDAEGAP
LPISDAGDLR GGDERILFVE DDDDQLHTIP RVLESLGFTV RALKSPSHAA QLLRENPSAY
DLVITDFDMP ETNGLELADE IGDIAPRVPV IMVSGRDVAA EGALAFPNIK AIVPKPYNRN
ILSETIRKVL G
|
|---|
| |