| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3190 |
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| Symbol | |
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| ID | 3758165 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 3177669 |
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| End bp | 3180227 |
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| Gene Length | 2559 bp |
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| Protein Length | 852 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637784101 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_389679 |
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| Protein GI | 78358230 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1639] Predicted signal transduction protein
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.43423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACGC AAGAAGCAGC TGACCGCAGT AAGACCATGG AGTGGTACTC CGAGTGTCTT
CAGCTCACGT TTCCCCCTGT GATGGTCAAA CTGCTGCAGG CGCTTGCCCA GCCGGAGCCC
GATTTTTCTG TCATCGCCGA GCTGCTGGCC ATGGACCCGG TTCTTGCGGC CACCATTCTG
GAACTGGTCA ACTCTCCCTA CTACGGGCAG CGCAATCCCG TGTCCGACAT GCAGCGGGCC
GTAGTGGTAC TCGGCTCGCG GGAAATTCTC AAAATAGCCC TGTCCATAGC CTACCAGCAG
CGCGTGACCG GCGCACTGCA CCGCAAACCA ACCGAACTTT TTCCCGACTG GCGCATGGCA
CTGTGGAGCG CCATTGCCGC AGAAAAACTG TCGGCCCAGC TGGCACCCGG CGACGAGGCT
CTGGCCTATC TTGCCGCACT GCTCAAAGAT CTGGGAATTT TTATCAGACA GTGCACCCGC
AGTTCAGACC CCGTGCTTGC CCGCCGCCGT TATCTGACGG AATATTCCCG CGCCCACGCC
ACATCCGAAC AGGTCCACTG GGGCAAAGAG CATCAGGAGC TTTCCGCAGA ACTGTTCAGC
ACATGGAACA TGCCGCAACG CTTTGTCGAC GCGGTGCGCC ACCATCATGC CCCGACGCTT
AACGGGCTGG ACCCCTTCAC GTTGTGCGTC GCGCTTGCCA CCCGCTGGGC CGAACTGCTG
CAGACCGGAC AGGGCGATCA TGCGGAACTC ATCCGCCATG AAATGCTGAT GGCCGGGCTG
CTGCAGCTTG ACGGGCCGGG TATGGAAGCG CTGCGCGCCG ACTGTGCCAC CCGCTTCCGC
GTTCTGCTCA GCTCTCTGGG CATAGAAGAC GCCCCGCTTT CCGACAGACT CTACACCCAG
ACGCTTGAAG ACATTCAGCG CTTTCATTTT CTGAGCACAG AACTGCAGCG CGCCGCCTCG
TACGAAGAAG CCGTCAAAAT GACCGGCAGA CAGCTGCACT GGCTGTGGAA CATGAAAAAA
TGGGAAGTGG CTCTGCGCGA TCCTTCCGTA AACAGATATG TGCTTTTCCG TCCTGTGCCC
GAACAGGGTG TGCAGCCCGT TGCCAGCAGT GCCGAGGTTG ACGCCCTGCC GTGGAGCAGA
GGCGGTGTGC GCCTGCCGCT GGCTGCCGAG GGTGACGTGT ACGGCAGCAT GAACGTGCCG
CGCAGCAAAA CCAGACTGCA GGAAGAAGGC AGCCTGGCCG TATACGCCAG ATTTCTCTCA
AAAGGGCTGG AAATATTCTA TACGGAACAG AGCGGACTGC GCAGTAAAGC CCGTCTGCTT
GATTCGCTGC CCAACATGGT GGCGCAGGTG GACGCCACAG GCATCATACG CGAAGCCAAC
ACGGCCTTTC TTGCACTTGC CGGGCAGGAC AGCGACCCGC GCGGGCATGC TTTAAGCGAC
GTGCTGCGCA ATGCATACGG CATTGAGACC GAATCAGTAT GGCGGCAGAT CACGGCGGAA
ACACAAAACA ATGCCGCAAA CAAAATTTTT ACATACTGCA CCACGCAGGG AGCAGCCCGT
ACCTGCGCTC TGCTCAGCAT CTTCCGCAAC CTGCCTGAGC AGGGGGCATT TCTGGTACGT
ATCGAAGACA TAACACAGGT TTCCGCACTG GAAGCCGAAG TGCTGGAACA AAATGACTTT
CTGAGCAGCC TCATGGAGGC CATGCAGGAG GTGGTGTTCA CCGTCGACGC CACCGGCAGA
GTGCTGTGGA CCAGCTCGGA CATGCTGCTG CAGGCCGGTG CCATGCTGTT TGACATCGCC
GCCGCCACAA CGCCCGGTGC CGCGTGGGGG GCCGATCATC TGCCTGTGCA GCGGCAGGCG
GACACTGCGG AACAGCAGAC GGCACACCCG CAGGAAAAAC AGACGCCCGT ACCGGTGGAA
GTCGCCATAA AACTGCCCGA CGGCAGCAGC GCACTGTACG AGCTTTCAGT CTCGCCGCTC
AAAACGCGGG CGGAAACAGC GCGCTGGATC ATCGTGGGGC GCGATCTGAC CAGCATCCGG
CGCATGGAAG AAAAAATGCG CATGCAGGCA GTGTTTGACG GCCTCACAGG GCTTTTCAAT
CATACGCATT TTCACATGCT GCTCGACAGA GAAATAGCCC GCTGCCATCG CACACGGCAT
CCTCTGGCAC TTATCTTCCT TGATCTGGAC GGGTTCAAAG CCATCAACGA CACGCAAGGG
CACCGCGAAG GCGACAGAAT ACTGCGTCAG GTTTCCAACG CCCTGCGCTC CTGCATACGC
AAAGGAACTG ATTTTGCCTG CCGCTACGGC GGCGACGAAT TTACCGTCAT CGTGACGGAA
TTCAAAGAAG ACGCGCTACC CGCCATGTCC GCCCGCATAC TGGACGCCAT TGAATCGGGC
ACATCAGGTG CTGTAAGCGC CAGTGTGGGG GTTGCCCTTC TGCAATCGCA GGATTCTGCG
GAAAGTCTTG TCCAGCGGGC CGACACCGCA AGCTACGCCG CAAAAAAAGC CGGAGGACGG
CAGGTTGCTC AAGCCCCCCT GCATCCCGGT TCCGCATGA
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| Protein sequence | MTTQEAADRS KTMEWYSECL QLTFPPVMVK LLQALAQPEP DFSVIAELLA MDPVLAATIL
ELVNSPYYGQ RNPVSDMQRA VVVLGSREIL KIALSIAYQQ RVTGALHRKP TELFPDWRMA
LWSAIAAEKL SAQLAPGDEA LAYLAALLKD LGIFIRQCTR SSDPVLARRR YLTEYSRAHA
TSEQVHWGKE HQELSAELFS TWNMPQRFVD AVRHHHAPTL NGLDPFTLCV ALATRWAELL
QTGQGDHAEL IRHEMLMAGL LQLDGPGMEA LRADCATRFR VLLSSLGIED APLSDRLYTQ
TLEDIQRFHF LSTELQRAAS YEEAVKMTGR QLHWLWNMKK WEVALRDPSV NRYVLFRPVP
EQGVQPVASS AEVDALPWSR GGVRLPLAAE GDVYGSMNVP RSKTRLQEEG SLAVYARFLS
KGLEIFYTEQ SGLRSKARLL DSLPNMVAQV DATGIIREAN TAFLALAGQD SDPRGHALSD
VLRNAYGIET ESVWRQITAE TQNNAANKIF TYCTTQGAAR TCALLSIFRN LPEQGAFLVR
IEDITQVSAL EAEVLEQNDF LSSLMEAMQE VVFTVDATGR VLWTSSDMLL QAGAMLFDIA
AATTPGAAWG ADHLPVQRQA DTAEQQTAHP QEKQTPVPVE VAIKLPDGSS ALYELSVSPL
KTRAETARWI IVGRDLTSIR RMEEKMRMQA VFDGLTGLFN HTHFHMLLDR EIARCHRTRH
PLALIFLDLD GFKAINDTQG HREGDRILRQ VSNALRSCIR KGTDFACRYG GDEFTVIVTE
FKEDALPAMS ARILDAIESG TSGAVSASVG VALLQSQDSA ESLVQRADTA SYAAKKAGGR
QVAQAPLHPG SA
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