| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3167 |
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| Symbol | |
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| ID | 3758142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 3154355 |
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| End bp | 3156607 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637784078 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_389656 |
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| Protein GI | 78358207 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.402315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAAATC TCTTCGGCGC CAAGCGCCTC ACCGCCACCG TGGGCGGTAA AGAAATCATC
ATGGAAACCG GGCGACTGGC CAATCAGGCC GACGGCGCGG TTTGGATTCA GTGCGGCGGC
ACCGTTGTGC TGTGCACCGT GTGCACGCAG CCGCTGGAAC GCGAAATCAG CTTCTTTCCG
CTGGTTGTTG ACTACACCGA AAAGATGTAC GCGGCAGGCC GCATTCCCGG CAGCTTTTTC
CGCCGCGAAA TAGGCCGCCC CAGCGAGCGC GAAACTCTTG TTTCCCGCCT CATCGACCGT
CCCTTGCGTC CGCTGTTCCC CAAGGGTTTC ACCAACGAAG TCCAGATTCT GGCCAATGTC
ATTTCCGCCG ATCAGGAAAA TGACTCCGAC GTGCTGGCGC TGTGCGGTTC CTCCGCCGCC
GTCATGCTGT CCAGTGTCCC CTTTGAAGCT CCCGTGGCCG GTGCCCGCGT CTGCCGCATC
GACGGCGAAT TTGTGCTTAA CCCCACCATC ACCGAAGCGG CAAAGGCCGA CCTCAACCTT
GTTGTGGCCG CCAACCGCGA CGCTCTGGTC ATGGTTGAGG GCGAAGCCGA CTTCGTGCCC
GAAGAAGTGA TTGCGCAGGC TCTGGAATGG GCGCACCGCG AAGTGCAGCC CATCATCGAC
ATGCAGGAAA AGCTGCGCGA ACTGGCAGGC AAGGCCAAAA TCGAGTTCGT GGCTCCTGAA
GAAGACACTG AACTGAAGGA AAAGGCCGAA GCCCTTGCCA CCGCAGATCT GGCAGCCGCA
CTGCAGGTCA GGGAAAAAAT GGCCCGCAAG GAAGCCAAAA AGGCCGTAAA GGAAAAAGTG
AAGGCCGCCC TGCTGCAGGA CCCCGCCTTT GCCGAAACTC CCGAACGCCT TGCCGCTCTG
GGCGATATTC TGAGCAGCCT TGAAAAACGC ATCGTGCGCC AGCGCATACT CAAAGAAGGC
CTGCGCATCG ACGGCCGCGA CACCAAAACC GTGCGCCCCA TCATCATCGA AGCAGGTGCC
CTGCCCCGCG CACACGGTTC GGCTATTTTC TCGCGCGGCG AGACCAAAAG CCTTGTGGTG
ACCACTCTTG GCAGCACCAC CGACGAACAG CGCATGGACT CCCTTACCGG TGACGTAACC
AAGCGCTTCA TGCTGCATTA CAACTTCCCG CCCTATTCGG TGGGTGAAGT GAAGCCCGTG
CGCGTTTCCC GCCGCGAAAT CGGTCACGGT GCGCTGGCAG AACGCGCTCT GCGCCCCGTA
CTGCCCTCGC CCGACAGCTT CCCCTTCACA CTGCGCGTGG TTTCCGAAAC CATGGAATCC
AACGGCTCGT CCTCCATGGC CGCAGTATGC GGCGGCAGCC TTTCGCTGAT GGACGCCGGT
GTGCCCGTCA AGGCTCCGGT GGCCGGCATT GCCATGGGTC TCATCAAGGA AGATGACCAG
TTCATCGTTC TTACCGACAT TCTGGGTGAT GAAGACGCTC TGGGCGATAT GGACTTCAAA
ATCGCCGGCA CCGCAGAAGG CGTCACCGCC GTGCAGATGG ACATCAAAAT CGACGGCTTG
CCCGCCGAAG TGATGGGCCG CGCACTGGCT CAGGCCCGCG AAGCACGTCT GCACATTCTG
AATGAAATGG CCAAGGTGCT GCCCGAGCCG CGTCAGGCGC TTTCCAAATA CGCTCCCCAG
CTGAGCGTGG TGGAAGTGAA CCCCGAAATC ATCCGCGTGA TCATCGGCCC CGGCGGTAAA
AACATCAAAG CCATCACCTC GGCCACGGGT GCATCCATCG ACATCGAGGA CAGCGGCAGA
ATCTCCATTT TTGCCCCCAC CAAAGAGTCC ATGGATATGG CCCGCGAAAT GGTCATGTAC
TACGACCAGC GCCCCGAACT GGGTAAAAAC TACACCGCAA AAGTCCGCAA GATCATGGAG
ATCGGCGCCA TTGTGGAAAT TCTGCCCAAT TGTGAAGCGC TGATTCACAT CTCGCAGCTG
GACACCTCGC GCGTGGAAAA AACCGAGGAC GTTGTGCAGC TGGGACAGGA CGTGGAAGTC
AAGGTCATCG AGATCAATGA CGGACGCGTA CGCGCCTCGC GCAAGGCAGT TATGCTGGAA
GCGCAGGGCG TGGAATGGGA TCCGGCCGAC ACCGCACGCC CCCCGCGCAA ACCCCGCGAC
CGTGACGACC GCGGAGACCG CGGCGGACGC GGCGACCGTG GTGACCGCGG CGGACGCAAC
GGACGCGGCG GCGATCGTCG CGACCGTCGC TAA
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| Protein sequence | MENLFGAKRL TATVGGKEII METGRLANQA DGAVWIQCGG TVVLCTVCTQ PLEREISFFP
LVVDYTEKMY AAGRIPGSFF RREIGRPSER ETLVSRLIDR PLRPLFPKGF TNEVQILANV
ISADQENDSD VLALCGSSAA VMLSSVPFEA PVAGARVCRI DGEFVLNPTI TEAAKADLNL
VVAANRDALV MVEGEADFVP EEVIAQALEW AHREVQPIID MQEKLRELAG KAKIEFVAPE
EDTELKEKAE ALATADLAAA LQVREKMARK EAKKAVKEKV KAALLQDPAF AETPERLAAL
GDILSSLEKR IVRQRILKEG LRIDGRDTKT VRPIIIEAGA LPRAHGSAIF SRGETKSLVV
TTLGSTTDEQ RMDSLTGDVT KRFMLHYNFP PYSVGEVKPV RVSRREIGHG ALAERALRPV
LPSPDSFPFT LRVVSETMES NGSSSMAAVC GGSLSLMDAG VPVKAPVAGI AMGLIKEDDQ
FIVLTDILGD EDALGDMDFK IAGTAEGVTA VQMDIKIDGL PAEVMGRALA QAREARLHIL
NEMAKVLPEP RQALSKYAPQ LSVVEVNPEI IRVIIGPGGK NIKAITSATG ASIDIEDSGR
ISIFAPTKES MDMAREMVMY YDQRPELGKN YTAKVRKIME IGAIVEILPN CEALIHISQL
DTSRVEKTED VVQLGQDVEV KVIEINDGRV RASRKAVMLE AQGVEWDPAD TARPPRKPRD
RDDRGDRGGR GDRGDRGGRN GRGGDRRDRR
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