Gene Dde_3113 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_3113 
Symbol 
ID3758782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp3102377 
End bp3105265 
Gene Length2889 bp 
Protein Length962 aa 
Translation table11 
GC content59% 
IMG OID637784023 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_389602 
Protein GI78358153 
COG category[T] Signal transduction mechanisms 
COG ID[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0730498 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTTTAC CGTTATCTGC TCCGCAGACA ACGCGCACCG TACAGTGCCC CCCCTGCGCG 
CCGGATAACG CCATGCACCC GCGCGCGGTT CTGCCGGCCC TGTTCCTGCT TGCGGCTGCA
GTTTTCTTCC TGTGCTGGGC ACCGCCCCGG AACGCGTCGG CGCAGCCCCC TCCCGGCACA
GGGCGCACGC ACTTTCTGCT GGTACATTCC TATCACCCCA ACATGCTGTG GGTGCAGGAT
ATCAACAGCG GCGTTCAGGA AGTTCTGGGG CCGGCCATAG ACGCTTCCAA CGGCACCATG
CGGCTTTCAG TCGAATTCAT GGACACCAAG CGGCATCCCG ATGCAGCATA CCGCGCCGAC
ATACTGGCCC TGCTGCGCGA CAAATACGCG CAGGACCCGC CCGACGTCAT CATTACCGCC
GACAACATCG CCCTGAACAC CCTGCTGGAC GAACACGAAG CCATCGCCCC CGGCAGCCGT
GTGGTCTTCT GCGGGTACAA CAACTATACC CCCGACGCAC TGCGCGGGCA TGACGACGTC
ACGGGCATCG CCGAAAAAGT CAGCATACGC GAAACCATAC AGGCTGCGGC AGCCATGCTG
CCGCAGACAT CGCGGTTTAT TGTCATCAGC GACCGTTCGG AAACCGGCCG TGCCATGACG
CACGAACTGG CGCTGCAGAC TGCCGGTATA CCGGAACACG GGCGCATGGA ACTGTGGGAC
GCCTATACCT TTGCGGATCT GGGCAGACAG CTTGCCGCGC TGCAGGGTAC CGAAACCATT
GTGCTGCTTT CGGCCCTGCA GGACACAGCG GGCAATGTGC AATCGTACAG GCATAGCCTG
CGCCATATCC TTGCGGCGAC AGACAGGCCG GTTTTTGCCG TTTTCGGCTT TTATGCCGAC
AAAGGCATTG TGGGCGGAAA ACTGACGGAC GGAGTCATGC AGGGACGCGA AGCCGCCCGC
ATGGCGCTGC GCATAGCACA GGGCACCCCG CCATCGCGCA TCCCCGTCAT CACCGAAAAT
ATCAACCGGT TTGTATTCAA CCACGAGCTG CTGGCCCGGT ACGGTATTTC CTCTGACAGC
ATTCCCGCAG AAAGCACCGT GCTGAACAGG CCTCCCTCTT TCTTCACACG GTACCGGCAG
GTGCTGCTGC CCGCCGGTGT GCTGGTGGCC CTGCTGGTAC TGGCACTGGC TCTTGAATCG
CACCACCTTG TCAGACAAAG AGCCGTGGAG CAGAGCCTGC GCGAAGCCAA AACCCGCTAT
CGCGAACTGG TGGACAACGC GCGTTCGGTC ATCATGCATA TCGACCGCAA CGGGCAGATA
GAATTCATCA ACGAGTACGG ACTGTCCTTT TTCGGATACG AGGAGCATGA GCTGACAGGA
AAAAGCGTTG CGGCGACAAT TCTGCCGCAA AACGCGGACG GCACCCCGTA TTCCGAACTG
CTGCGGCGTA TTCTGGAAAA TCCGGAAACC TATGCCTGCC ATGAAAATGA AAACATACGC
AAAAACGGCG AACGGGTCTG GATATCATGG CTCAACAGGC CGCTGCGCGA TGCTTCCGGC
AACGTGACCG GATTGCTTTC CGCCGGGCAG GATGCCACCG AACGCAAAAA AGCACAGGAC
GCTCTGGCAG AACGTGAACG CAGCTATTCG GTATTGCTTT CAAACCTGCC GGGCATGGCT
TTCCGCAGGC AGACCGGCGG CGACGGCACG TTTCTTTTTG CCAGCGAAGG CTGTCTGCCG
CTGACAGGGT TTGCCCCCGA TGATTTTGTG CAGCACGGCA GAAATCTGCG GGGGCTGGCC
CACCCCGAAG ACCTGCCCCG CATTACCGGC GCCATAGACG CATCGCCGCA CCGCTACGCT
GTCGAATACC GCATAATCCG TTCCGACGGT GAAACGCGCT GGGTATGGGA AGGCGGCATG
ATGATATCCG GCAGCGGCAC GTCACCCTGC CGGTCGTCCG GCGACAGCAT CTGCGTTATC
GAAGGATTCA TGACCGATAT CACGGCACGG ATGACCGCGC GCACCGAGCT GGAACGCCTG
AATGAAGAAC TTGAAGAGCG GGTTGCTGCA CGCACCGCCG AACTGCAGAC ATCGCTGGAG
CATCTGCGTC AGGCTCAGCA CCAGCTTGTG GAAACAGAAA AAATGGCAGC GCTGGGCGGA
CTGGTGGCCG GTGTGGCGCA CGAAATCAAC ACTCCCATCG GCATCGGAGT GACCAGCACA
TCCTATCTGC AGGAAAAAAT GCAGCAGCTT GAAGAGCTGT ACAGATCCGG CGGCATGAAA
CGTTCGGATA TTGAAAACTT TCTGCGCGTG GGCAACGAGT CCCTGACCGC CACCCGCATG
AATCTTTCCC GCGCGGCGGA TCTGGTACGC AGCTTCAAGC AGGTTGCCGT TGATCAGTCC
GATGAAGATA CCCGCCGCTT CAACGTGCTG GACTATCTTG AAGAAGTGCT TGTCAGTCTG
CGTCCGCGCT ACAAACGCAC TTCGCACCGC GTCGAACTGT CCGGCGACAA GGACCTTGTT
ATCACCAGCT ATCCCGGCGT GTTCATGCAG ATAGTCACCA ATATTCTGAC AAACGCCCTG
CTGCATGCCT TTGACGGCAT GGAAAACGGC GTGCTGAGCA TACACGCCGT CCGTCAGGGA
AATGACCTGA CACTCACCCT TGCCGACAAC GGCAAAGGCA TGACGCCGGA AATTCTTTCA
CGCGTGTTCG AACCGTTTTT TTCCACACGC AGAGGCAACG GCGGCACCGG ACTGGGCATG
CACATCGTAT ACAACCTTGT AACACGCAGA CTCAAAGGTA CCGTGCAGTG CCGCAGCACT
CCGGGCGACG GCACCACATT CACCATAACC GTGCCCATGC AGGATTCCCC CTCTGCAGTA
CAGACATAA
 
Protein sequence
MPLPLSAPQT TRTVQCPPCA PDNAMHPRAV LPALFLLAAA VFFLCWAPPR NASAQPPPGT 
GRTHFLLVHS YHPNMLWVQD INSGVQEVLG PAIDASNGTM RLSVEFMDTK RHPDAAYRAD
ILALLRDKYA QDPPDVIITA DNIALNTLLD EHEAIAPGSR VVFCGYNNYT PDALRGHDDV
TGIAEKVSIR ETIQAAAAML PQTSRFIVIS DRSETGRAMT HELALQTAGI PEHGRMELWD
AYTFADLGRQ LAALQGTETI VLLSALQDTA GNVQSYRHSL RHILAATDRP VFAVFGFYAD
KGIVGGKLTD GVMQGREAAR MALRIAQGTP PSRIPVITEN INRFVFNHEL LARYGISSDS
IPAESTVLNR PPSFFTRYRQ VLLPAGVLVA LLVLALALES HHLVRQRAVE QSLREAKTRY
RELVDNARSV IMHIDRNGQI EFINEYGLSF FGYEEHELTG KSVAATILPQ NADGTPYSEL
LRRILENPET YACHENENIR KNGERVWISW LNRPLRDASG NVTGLLSAGQ DATERKKAQD
ALAERERSYS VLLSNLPGMA FRRQTGGDGT FLFASEGCLP LTGFAPDDFV QHGRNLRGLA
HPEDLPRITG AIDASPHRYA VEYRIIRSDG ETRWVWEGGM MISGSGTSPC RSSGDSICVI
EGFMTDITAR MTARTELERL NEELEERVAA RTAELQTSLE HLRQAQHQLV ETEKMAALGG
LVAGVAHEIN TPIGIGVTST SYLQEKMQQL EELYRSGGMK RSDIENFLRV GNESLTATRM
NLSRAADLVR SFKQVAVDQS DEDTRRFNVL DYLEEVLVSL RPRYKRTSHR VELSGDKDLV
ITSYPGVFMQ IVTNILTNAL LHAFDGMENG VLSIHAVRQG NDLTLTLADN GKGMTPEILS
RVFEPFFSTR RGNGGTGLGM HIVYNLVTRR LKGTVQCRST PGDGTTFTIT VPMQDSPSAV
QT