Gene Dde_3078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_3078 
Symbol 
ID3758072 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp3068055 
End bp3068897 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content57% 
IMG OID637783988 
ProductFe-S cluster assembly protein NifU 
Protein accessionYP_389567 
Protein GI78358118 
COG category[C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0694] Thioredoxin-like proteins and domains
[COG0822] NifU homolog involved in Fe-S cluster formation
[COG1251] NAD(P)H-nitrite reductase 
TIGRFAM ID[TIGR02000] Fe-S cluster assembly protein NifU 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGGATT ACACCGACAA GGTTCGAGAC CACTTTCTCA ACCCGCGTAA CGCGGGTGCC 
ATAGAAGACG CCAACGCCGT GGGAGAGGTA GGAAGCCTTG CCTGCGGCGA TGCTTTGAAA 
CTATACCTTA AAATTGACGA TCAGGAACGC ATTGTAGATG CGAAATTCCA GACGTTCGGC 
TGCGCCAGCG CCATTGCCTC TTCCTCCGCC CTGACGGAGA TGATCAAAGG CATGACGGTG 
GATGAAGCCA TGAAGGTGAC CAACAAGGAC ATCACCGCTT ATCTGGGCGG GCTTCCCCAG 
CAGAAAATGC ACTGCTCCGT CATGGGGCAG GAGGCGCTGG AAGCCGCCAT TAAAAATTAC 
CGCGGCGAAG AAGTGGAACA GCACCACCAC GAAGGGCAGC TGGTCTGTAA GTGCTTCGGC 
GTGACCGACG AGCAGATTAT CCGCAGCATA CGCGAAAACA AACTGACCTC GGTGGAAGAG 
GTGACCCACT TCACCAAGGC CGGCGGCGGC TGCGGCGACT GCCTGAACGA CATACAGAAG 
CTGCTGGATG AAGAGCTGGG CAAAACAGCC GCCTGCGAAG TTCCCGAACC GCAGCCGCGT 
ACCCTCAGCA ATGTCCAGCG CATGCAGCTG GTGGTAAAAA CGCTGGAAGA AGATATACGC 
CCCAGCCTGC AGAAGGACGG CGGCGACATA GAGCTTGTGG ACATTGACGG CAAGGAAGTC 
AAAGTCGCCC TGCGCGGCAT GTGTACCCAC TGCCCTTCCA GCCAGCTCAC GCTGACCAAT 
TTTGTGCAAC GTACGCTGCG CGAACACGTG GAACCGGACA TCACGGTGAA GGAGGTTTCA 
TAA
 
Protein sequence
MWDYTDKVRD HFLNPRNAGA IEDANAVGEV GSLACGDALK LYLKIDDQER IVDAKFQTFG 
CASAIASSSA LTEMIKGMTV DEAMKVTNKD ITAYLGGLPQ QKMHCSVMGQ EALEAAIKNY 
RGEEVEQHHH EGQLVCKCFG VTDEQIIRSI RENKLTSVEE VTHFTKAGGG CGDCLNDIQK 
LLDEELGKTA ACEVPEPQPR TLSNVQRMQL VVKTLEEDIR PSLQKDGGDI ELVDIDGKEV 
KVALRGMCTH CPSSQLTLTN FVQRTLREHV EPDITVKEVS