| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_3038 |
|---|
| Symbol | |
|---|
| ID | 3758031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | - |
|---|
| Start bp | 3025544 |
|---|
| End bp | 3027853 |
|---|
| Gene Length | 2310 bp |
|---|
| Protein Length | 769 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637783947 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_389527 |
|---|
| Protein GI | 78358078 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACA GTGTTTCGGA AGGGATGAAA GAGTATACAG GCTGCCCTGT GGCTGATGAA
CTGCTGCTGG CAGGTCTGGA TGACCCGCTG CTGATAGTTG CCGCGGACAG CGGGCATATG
CTGTGGACAA ATCAGCAGGG GGCCGTGTGG TGCGGGCTTT ATGCGGCAGA GACTGCTGCG
GTGCAGGGAA TACCGCCTGC GCTGGCGTCC GGATGGCAGC ATCTTACGGG GCTTACGGTG
TGCGGCAGGC TTTGTTGTGC CGACGCGCTG GCAGTACAGT GGCGCGGACG GCGGGCAGTG
CTGCTGCGGG GCCGCACGGA CACCGGAAAA AAGGAGCCGC CTGCGGAAAA TGCGCAGGCC
GGTGTGGGGG CACCCTGTGC GCCGCGGCGT GAAGACGAAC GGTACCGCAT TGTGTACGAC
ACCATGGCGC AGGGAGTTGT CTTTCAGGAC AGAACGGGAA GCATTGTATG CGCCAACGCT
GCTGCCGAAC GTCTGCTGGG GCTCGGAAGC GATGCCATGC GCGGCATGGA TAGCCATTCC
GGAAGCTGGC AGGCGGTGGA TGTTGACGGA AGTCCGTTGC CGGGCAGCGC TCATCCTTCC
ATGGTTGCGC TGCGTACGGG ACGTCCGGTG TCCGGCCGGG TAATGGGCAT CCGCCACCAG
ACAACCGGAG CCCAGCGGTG GCTGGTGGTC AGTGCCACAC CGCTTTTCAC CGGCGGCGGC
AGCGTTCCGG CGGAAGTCTT TTCCACGTTT GAGGATATTA CCGAACTGGC AGCGGCCCGC
CGGGAGCTTG CCCTGTACAG TGAACGCCTT CAGCAGGTAA TCGACAGGTC GCCTCTGGGG
GTGTTCCTGT GGCAGTATCA GGACGGCCGT TTTACTTTTC TGCATGGTAA TCCCGCATCG
GAAGCCATGC TGGGCATAAC GGTGGCGGAG TATGCCGGGC AGGAACTGCT GGAAATGCTG
CCTGAACTCG ACCCCGCCGT GGTGCCTGCG GAATACGCGA ATGTCATGCG TACCGGTATT
CCGTGGCATT CCGAACAGCT GGATTACGCC GACGATGTCA TTTCCGGAGC TTTTGAGGTG
CATGCTTTCC GTGCCGGAAG CGAAGTGCTG TGCGTGATGT TTCAGGATAT TACGCAGCGC
AAGCGCACAG AGGCGGAACT GGCCACGGTG ACGTCTCTGC TGCAGGAACT CATTGATGTT
ATGCCGTCGG TGCTTGTGGC TGTGGACACC GCAGGCAGGG TGACCCGATG GAATCATGCC
GCGGAATCGC TGACGGGCAT CAGCGCTGCG CAGGCGGCGG GCAGGGAACT GGACGGCTTG
TTTGCCTGGC CTGCCTTTGT GCGCAATCTG CTGGGCAGCG TGCAGGACGG GCCGGAGTGT
GCGCATCTGG AAGATGCAGC CTGGGAGCAT GACGGCGTTG TCCGCCACTG GGACGTGACC
ATGTATCCGT TGAAGGAAGG CGGAGGCGGC GGATATGCGC TGCGTCTGGA CGATGTGACA
TCGCGGGTAC GGCTGCGGGA AATGATGATC CAGTCTGAAA AGATGCTGTC CGTTGCCGGT
CTGGCGGCGG GTATGGCGCA TGAAATCAAC AATCCGCTGG GAGCCATTGC GCAGGCGGCA
CAGAACTGCC TGCGGCGTAT GGGTACCGGT CTGCCGGCCA ATCTGCATAC CGCCGGTGAA
CTGGGGCTGG ATTTGTACGC CATGCAGACA TATCTGGACC GGCGGGGCAT ATACGCCTTT
ATGGAAGATA TCCGGCACAG TTGTTCGCGG GCGGCGCGGA TAGTCAGCAA TATGCTGGCT
TTTTCCCGCA CGGAAAAATC TCCGCGCAGC TGCGCCGATA TCCACGATGT AATCCGGCAG
GCCGTGGTGC TGGCAGAAAC GGATTACGAC ATGAAGCGTA AATATGACAT AAAACGGGTG
CGCGTGCGGT ATGATTTTGC GGAGAATGTG CCGCAGGTGT GGTGCAGCGT GCAGGACCTG
CAGCAGGTTT TTCTGAACCT TGTGCGCAAC AGCAGTCAGG CCCTGAGTGA ACAGGCCGGA
CATGCGGCAC CCGAACTGCT GCTGCGTACC AGCCTGCAGC CTGAAGGGCG GGTGGAGATA
CGCGTGTGCG ATAACGGTCC GGGAATGAGC GAAGAGGCGG CGCGGCGTTG CTTTGAGCCT
TTTTACACCA CAAAACCGGT GGGCGAAGGC ACGGGGCTGG GGCTGTATGT AAGCTATCTC
ATCATCAAAC AGCATCAGGG CACGATACAT CTGAACAGCG GCCCGCAGCG CGGCGCGGAA
TTCGTCATCA GTCTGCCCGC ATTGTGCTGA
|
|---|
| Protein sequence | MMNSVSEGMK EYTGCPVADE LLLAGLDDPL LIVAADSGHM LWTNQQGAVW CGLYAAETAA
VQGIPPALAS GWQHLTGLTV CGRLCCADAL AVQWRGRRAV LLRGRTDTGK KEPPAENAQA
GVGAPCAPRR EDERYRIVYD TMAQGVVFQD RTGSIVCANA AAERLLGLGS DAMRGMDSHS
GSWQAVDVDG SPLPGSAHPS MVALRTGRPV SGRVMGIRHQ TTGAQRWLVV SATPLFTGGG
SVPAEVFSTF EDITELAAAR RELALYSERL QQVIDRSPLG VFLWQYQDGR FTFLHGNPAS
EAMLGITVAE YAGQELLEML PELDPAVVPA EYANVMRTGI PWHSEQLDYA DDVISGAFEV
HAFRAGSEVL CVMFQDITQR KRTEAELATV TSLLQELIDV MPSVLVAVDT AGRVTRWNHA
AESLTGISAA QAAGRELDGL FAWPAFVRNL LGSVQDGPEC AHLEDAAWEH DGVVRHWDVT
MYPLKEGGGG GYALRLDDVT SRVRLREMMI QSEKMLSVAG LAAGMAHEIN NPLGAIAQAA
QNCLRRMGTG LPANLHTAGE LGLDLYAMQT YLDRRGIYAF MEDIRHSCSR AARIVSNMLA
FSRTEKSPRS CADIHDVIRQ AVVLAETDYD MKRKYDIKRV RVRYDFAENV PQVWCSVQDL
QQVFLNLVRN SSQALSEQAG HAAPELLLRT SLQPEGRVEI RVCDNGPGMS EEAARRCFEP
FYTTKPVGEG TGLGLYVSYL IIKQHQGTIH LNSGPQRGAE FVISLPALC
|
|---|
| |