Gene Dde_3006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_3006 
Symbol 
ID3758804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2991966 
End bp2993321 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content54% 
IMG OID637783912 
Productresponse regulator receiver domain-containing protein 
Protein accessionYP_389495 
Protein GI78358046 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.883991 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCAGC TTGATATGAA AATGAAGCTC AAACAATATG AGCAGACAGT TATAGAATAC 
CTTGGCGCAC AGGGGGGTCA TTTCATCGTA GCCAGCGACG ATCAGACCTT TGTGGGCATT
CTGCGCACGA CGCTGCTCAA GCAGCTTGCC ATCAGCGGCG ACCCGCTGAC ATCCGTCACC
GACCCCGACT ACATCCTGAA AGTCATCCGC GACACTTCAC TGCGTCGTAA GCATCTGGTT
GTTTTCATAG AGCGCATGAT GCAGGGCAAG GACACCAGCA TGCTGGTGCG GCAGATGAAG
AACACCTTCG CCAACGTCAA AATCATCATT CTTACCGGAG AAACCGAACG GCAGCGCCTT
GTGCTGCTGC ACGAGATAGG TGCGGACAAC TTCATCAGCA AGCCCATATC CATCAACACC
CTCATCGAAA AGATAGCCTT CACCATCAAG CCGCAGGGCA AGCTGGGCCA GCTGATAGAT
GCCGCCAAGG CGCTGGTGGC TCAGGGCAAT TTTGAAACGG CACTGAAAGC CGCGCGTAAA
ATTCTGGAAG TGAAGCCCAA CAGCGCCGCC GGCTATCTGG TGATGGGTGA CGCATGGCAG
GGGCTCGGAA AGCTGGATAA AGCCCGTGAA AGTTTTGAAC AGGCCAGCGA ACACGCCAAC
CTGTATATGG AACCGCTGAA AAAACTGGCC GAACTGCACA AACTGACCGG CGACATGAAC
GAACGGCTGC GCTATCTGGA ACGGCTTGAT CAGCTTTCGC CACTTAATGT CGAACGCAAG
GTGGACATGG GTGAAATCCA TGTGGAACTT GGCAACGAAG AACGCGCCGA AGAGCTGTTT
GAAACCGCCG TACAACAGGC CACCAAAGAC GCCCTGAACT ACATTGGTGA AATTTCTGAA
AAAATAGCGG CTGTTTACAG TTCAAGAGAC CCCCACAAAG CCGAAAAATA CTACCGGCAG
GCTCTGGATG CCAAGGGCAG TCATCTTGAC CACACCGACA TAGCCACCTT CAACAGGCTG
GGCATTGCCC TGCGCCGTCA GGGCAAATGG CAGCAGGCCA TCGAAGAATA CGAAAAGGCC
CTGCACATCA CGCCGGATGA CCCCAACCTC ATGTACAACA TGTCCATGGC CTATGCCGAG
GGGCGGCAAT TTGACAAAGC CTGCAGCATC GTGATGCGCA TCCGCCAGAT TACACCGTCA
TTCGGTTCCA TGGACAAAAC GCTTTCGTAC AATATGGGCA TAATTTTCTC GCGGGGCAGG
CAACCCGCGG ATGCCAGGGT ATTGTTCGAA AACGCCCTCC GGCTCGACCC TTCGTTCGAA
AAAGCCCAGA AGGCGCTGGA AAATCTGGAA AGCTGA
 
Protein sequence
MSQLDMKMKL KQYEQTVIEY LGAQGGHFIV ASDDQTFVGI LRTTLLKQLA ISGDPLTSVT 
DPDYILKVIR DTSLRRKHLV VFIERMMQGK DTSMLVRQMK NTFANVKIII LTGETERQRL
VLLHEIGADN FISKPISINT LIEKIAFTIK PQGKLGQLID AAKALVAQGN FETALKAARK
ILEVKPNSAA GYLVMGDAWQ GLGKLDKARE SFEQASEHAN LYMEPLKKLA ELHKLTGDMN
ERLRYLERLD QLSPLNVERK VDMGEIHVEL GNEERAEELF ETAVQQATKD ALNYIGEISE
KIAAVYSSRD PHKAEKYYRQ ALDAKGSHLD HTDIATFNRL GIALRRQGKW QQAIEEYEKA
LHITPDDPNL MYNMSMAYAE GRQFDKACSI VMRIRQITPS FGSMDKTLSY NMGIIFSRGR
QPADARVLFE NALRLDPSFE KAQKALENLE S