| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2998 |
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| Symbol | |
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| ID | 3758796 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 2979009 |
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| End bp | 2983169 |
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| Gene Length | 4161 bp |
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| Protein Length | 1386 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637783904 |
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| Product | DNA-directed RNA polymerase., acetylornithine deacetylase |
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| Protein accession | YP_389487 |
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| Protein GI | 78358038 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTTAG ACGATCTGTT CTCCATGCGC GGAACCGCTG CCGGCCAGAC AAACATCCGC
AATCTGAAGG CAATGCAGAT TTCCATTGCC TCGCCGGAAA GCATTCGCGA ATGGTCCTAC
GGCGAAGTGA AAAAGCCCGA GACCATCAAC TACCGTACGT TCAAGCCGGA ACGTGACGGT
CTTTTCTGCG CAAAGATTTT CGGCCCCGTA AAGGACTACG AGTGTAACTG CGGTAAATAC
AAGCGCATGA AGCACCGCGG TATCGTGTGT GAAAAATGCG GCGTTGAAGT TATCGCCTCA
AAGGTGCGCC GCGAGCGCAT GGGTCACATA GAACTGGCCG CGCCTGTGGC GCATATCTGG
TTCCTCAAGA CTCTGCCTTC CAAAATCGGC ACCCTGCTCG ACATGACCAT GGCCGATCTG
GAAAAGGTGC TCTACTTCGA TTCCTACATC GTGCTTGACC CCGGTTCCAC CAGTCTTGCC
AAGCTGCAGG TCATTTCCGA AGACCAGTAT CTTCAGATCA TCGACCATTA CGGCGAAGAC
GCTCTGGTGG TGGGCATGGG TGCAGAAGCC ATCCGCTCGC TGCTGGAAGA ACTGAATCTT
GAGGCACTGC GGGCCGAACT GCGCGAAGAA TCGCAGAGCA CCCGTTCGCA GACCAAAAAG
AAAAAGCTGA CCAAGCGCCT GAAAATCGTC GAAGCGTTCC TTGAGTCCGA CAACAAGCCC
GAGTGGATGG TGATGGAAGT TGTTCCCGTC ATTCCGCCCG AGCTGCGTCC TCTTGTACCG
CTGGACGGCG GACGTTTTGC CACGTCCGAC CTGAACGACC TGTACCGCCG CGTCATCAAC
CGCAACAACC GCCTCAAGCG TCTGATGGAA CTGGGTGCGC CCGATATCAT CATCCGCAAC
GAAAAGCGCA TGCTGCAGGA ATCGGTTGAC GCCCTGTTCG ACAACGGCCG CCGCGGCCGC
GCCATCACCG GCACCAACGG CCGTCCCCTC AAGTCCCTTT CCGACATGAT CAAGGGTAAA
CAGGGCCGTT TCCGTCAGAA CCTGCTGGGC AAGCGTGTCG ACTACTCCGG CCGTTCGGTC
ATTGTGGTCG GTCCCAAGCT TAAACTGCAC CAGTGCGGTC TGCCCAAAAA GATGGCCCTC
GAACTCTTCA AGCCCTTCAT CTACTCCAAA CTGGAAGAAA GGGGACTGGC CTCCACCATC
AAATCTGCAA AGAAAATGGT GGAACGCGAA GAACTGGTCG TGTGGGACAT TCTTGAAGAA
GTGGTGCGCG AGTACCCCAT TCTGCTCAAC CGTGCGCCCA CGCTGCACCG TCTGGGCATT
CAGGCATTTG AACCGCTGCT GGTGGAAGGC AAGGCAATCC AGCTGCATCC GCTGGTCTGC
GCCGCCTACA ACGCCGACTT TGACGGTGAC CAGATGGCCG TCCACGTGCC GCTTTCTGTG
GAAGCACAGA TTGAATGCCG CGTGCTCATG ATGTCCACCA ACAACATTCT TTCGCCGGCA
AACGGCACTC CCGTCATCGT GCCCTCGCAG GACATCGTCC TCGGGCTGTA CTACATGACG
GTTGAGCGTT CGTTTGAAAA AGGCGAAGGC ATGGCTTTCT GCGCACCGTG GGAAGTGGTG
GCCGCATACG ATGCCGGCAG CATTTCTCTG CACGCGCGCA TCAAGGTGCG CATGCCCGAC
GGCCGTCTGC TGAACACCAC TCCCGGCCGT ATCATGGTGG GCGAAGTACT GCCCGAAGGC
GTGCACTTTG ATCTGGTGAA CACCGTTCTG ACCAAAAAGA ACATCGCGCG GCTGGTGGGC
AATGCTTACC GCGACGCCGG CACCAAGGCC ACCGTACTGC TGTGCGACCG CCTGAAGGAT
ATCGGCTACG AATTCGCCAC CCGCGCCGGT GTGACCATCG GCGTCAAGGA CATGACCATT
CCCCAAAGCA AGAAGGGCAT TCTGGCCGAC TCGCAGGCGG AAGTGGACAA CATCGAACGC
CAGTACCGCG ACGGTATCAT CACCCGCACG GAAAAGTACA ACAAGGTTGT GGACGTGTGG
ACCAAAGCCA CGCAGGACAT CTCGCAGGAA ATGATCAAAG AGATCTCCTA CGATGTCATG
CGCGACGAAA AGACGGGCAA AGAAGAGCTG AACCAGAGCT TCAACCCCAT CTTCATGATG
TCCAACTCCG GTGCGCGAGG CAACCAGGAC CAGATGCGTC AGCTGGCCGG CATGCGTGGT
CTTATGGCCA AGCCTTCCGG TGAAATTATC GAAACCCCGA TCACCTCGTG CTTCCGTGAA
GGTCTGTCCG TGCTGCAGTA CTTCACCTCC ACGCACGGCG CACGTAAGGG TCTGGCGGAT
ACCGCGCTTA AAACCGCGAA CTCCGGTTAC CTTACCCGTC GTCTGGTTGA CGTCGTTCAG
GATGTCATCA TCAGCGAACA CGACTGCGGC ACCGTCGACG GGCTGGAAGT GGGCCACCTT
ATCAAGGGCG GCGACATCAA GATGCGCCTT GCAGAACGTG TGCTGGGCCG CGTCACGCTG
TATCCGGTGA CCGACCCGGA AACCACCGAG GTGCTCTTCC CGGCCAACAC GCTTATTGAT
GAAAACGTGG CCAAAAAGCT GGACGAGGCA GGCATCAACT CTCTGCATAT CCGTTCGGCA
CTTACCTGCC GCTCCGACAG GGGCGTGTGC GCCATGTGCT ACGGCCGCGA CCTTGCCCGC
GGGCATGTGG TCAACATCGG TGAGACCGTG GGCATCATCG CCGCACAGTC CATCGGCGAG
CCGGGCACGC AGCTTACCAT GCGTACCTTC CACATCGGCG GTACGGCATC GCGCGAAATC
GAACGTTCGA ACATTCAGGC GCAGTACACC GGCCGTGCCG TTCTGTACCG TGTCAAATCC
GTCCGCAACA AAGACGGCCA GCACATGGTC ATGGGCAAAT CCGGTCAGGT AGGCATTGTG
GACGAACAGG GCCGCGAGCG CGAAAAATAC GTACTGCCTT CCGGTGCAAA ACTGCACGTG
GAAGAAGGAC AGGAAGTGAA GAAGGGCCAG CTGCTCGCCG AGTGGGACCC CTTCAACGAA
CCGTTCGTTT CGGAAGTGGA CGGTCTGGTC AAGTTCACGG ACATCATCGA AGGCAAGACC
GTTCAGGAAA AAGCCGACGA AGCAACCCAG ATGACCACCC AGACCATTAT CGAATACCGT
ACCACCAACT TCCGGCCGGC CGTCGCCCTG TGCGATGCCG ACGGCGTGGT GAAAACGCGT
CCCGAATCGA ACATTCCGGC CAGCTATTCG CTGCCGGTGG GCGCCATTCT GATGGTGCGC
GACGGTCAGG AGATCACCGC AGGCGACATC ATCGCCCGTA AGCCGCGTGA AAGCTCCAAA
ACCAAGGACA TCGTCGGTGG TCTGCCCCGC GTTGCCGAAC TCTTTGAAGT GCGCAAGCCC
AAAGATATGG CCGTGGTTTC GCAGATCGAC GGCATTGTCA CCTTTGCCGG TGAAACCAAG
GGTAAACGCA AGCTTGTTGT CACCCCTGAA ACCGGTGACG AGAAAGAATA TCTCGTACCC
AAGGGCAAGC ACATCACCGT CACCGACGGC GACTTTGTGG AAGCAGGCGA AATGCTGACC
GAAGGTCATC CCGAACTCCA CGACATTCTG GGCGTCAAGG GCGAAAAATA CCTTGCCAAC
TACCTTGTCG AAGAAATTCA GGATGTGTAC CGCTTCCAGG GCGTCGGCAT TGACGACAAG
CACATCGAAG TCATCGTGCG CCAGATGCTG AAAAAAGTGA CCGTGCTCGA CCCCGGTCAG
ACCAGCTTCC TTGTGGGAGA ACAGGTCGAC AAGGCCGAGT TCCGCATCGA AAACCAGAAA
GCCATCGAGG AAGGCCGCAC TCCGGCCACC GCCGAGCCGC TGGTTCTCGG TATCACGCAG
GCATCGCTGA CCACGTCTTC GTTCATCTCG GCGGCTTCCT TCCAGGAAAC CACCAAGGTG
CTTACAGAAG CTTCGCTGCG CGGAAAGAAC GACCACCTGC GCGGCCTGAA GGAAAACGTC
ATCGTGGGCC GTCTCATTCC CGCCGGCACC GGATACCGCG AGTATGTACA CTCCGACATC
TCGGTTCCCG AACAGAAAGA ACGCCCCGAC AGATTCCTTG AAGAGCTGGT GGGTGCACCC
CAGCCCGTTG TGGAAGACTA A
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| Protein sequence | MTLDDLFSMR GTAAGQTNIR NLKAMQISIA SPESIREWSY GEVKKPETIN YRTFKPERDG
LFCAKIFGPV KDYECNCGKY KRMKHRGIVC EKCGVEVIAS KVRRERMGHI ELAAPVAHIW
FLKTLPSKIG TLLDMTMADL EKVLYFDSYI VLDPGSTSLA KLQVISEDQY LQIIDHYGED
ALVVGMGAEA IRSLLEELNL EALRAELREE SQSTRSQTKK KKLTKRLKIV EAFLESDNKP
EWMVMEVVPV IPPELRPLVP LDGGRFATSD LNDLYRRVIN RNNRLKRLME LGAPDIIIRN
EKRMLQESVD ALFDNGRRGR AITGTNGRPL KSLSDMIKGK QGRFRQNLLG KRVDYSGRSV
IVVGPKLKLH QCGLPKKMAL ELFKPFIYSK LEERGLASTI KSAKKMVERE ELVVWDILEE
VVREYPILLN RAPTLHRLGI QAFEPLLVEG KAIQLHPLVC AAYNADFDGD QMAVHVPLSV
EAQIECRVLM MSTNNILSPA NGTPVIVPSQ DIVLGLYYMT VERSFEKGEG MAFCAPWEVV
AAYDAGSISL HARIKVRMPD GRLLNTTPGR IMVGEVLPEG VHFDLVNTVL TKKNIARLVG
NAYRDAGTKA TVLLCDRLKD IGYEFATRAG VTIGVKDMTI PQSKKGILAD SQAEVDNIER
QYRDGIITRT EKYNKVVDVW TKATQDISQE MIKEISYDVM RDEKTGKEEL NQSFNPIFMM
SNSGARGNQD QMRQLAGMRG LMAKPSGEII ETPITSCFRE GLSVLQYFTS THGARKGLAD
TALKTANSGY LTRRLVDVVQ DVIISEHDCG TVDGLEVGHL IKGGDIKMRL AERVLGRVTL
YPVTDPETTE VLFPANTLID ENVAKKLDEA GINSLHIRSA LTCRSDRGVC AMCYGRDLAR
GHVVNIGETV GIIAAQSIGE PGTQLTMRTF HIGGTASREI ERSNIQAQYT GRAVLYRVKS
VRNKDGQHMV MGKSGQVGIV DEQGREREKY VLPSGAKLHV EEGQEVKKGQ LLAEWDPFNE
PFVSEVDGLV KFTDIIEGKT VQEKADEATQ MTTQTIIEYR TTNFRPAVAL CDADGVVKTR
PESNIPASYS LPVGAILMVR DGQEITAGDI IARKPRESSK TKDIVGGLPR VAELFEVRKP
KDMAVVSQID GIVTFAGETK GKRKLVVTPE TGDEKEYLVP KGKHITVTDG DFVEAGEMLT
EGHPELHDIL GVKGEKYLAN YLVEEIQDVY RFQGVGIDDK HIEVIVRQML KKVTVLDPGQ
TSFLVGEQVD KAEFRIENQK AIEEGRTPAT AEPLVLGITQ ASLTTSSFIS AASFQETTKV
LTEASLRGKN DHLRGLKENV IVGRLIPAGT GYREYVHSDI SVPEQKERPD RFLEELVGAP
QPVVED
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