| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2997 |
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| Symbol | rpoB |
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| ID | 3758795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 2974769 |
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| End bp | 2978896 |
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| Gene Length | 4128 bp |
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| Protein Length | 1375 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637783903 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_389486 |
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| Protein GI | 78358037 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCAGC TCACAAAAAA ATTCGGCAAG ATCGAAGTCA CTCTTCCGAT TCCGCACCTG
CTCAATCTTC AGGTCGACTC GTACAAGAAG TTCCTGCAGG AAGGCGCGGC CGCTCTTGCT
CCTGACGAGG GGCTTGAGGG TGTGTTCAGA TCTGTGTTCC CCATCGAGGA TTTCAACAGA
ACCGCTAGCC TTGAGTATGT CAGCTACGAA ATAGGCGAGC CCAAATACGA TCAGGCCGAA
TGCATCTCCA AGGGTCTGAC CTATGAGGCT CCTATCCGTA TCAAGGTGCG TCTGGTCGTG
TACGATGTGG ACGAAGACTC TGAAAACCGC ACCATCAGGG ACATCAAGGA ACAGGATATC
TATTTCGGCA CTCTGCCGCT GATGACGGAA AAAGGCACCT TTATCATAAA TGGTACCGAG
CGTGTCATCG TCAACCAGCT GCAGCGTTCT CCCGGCATCA TCTTTGAGCA TGACGCCGGC
AAGACCCATT CCAGCCGCAA GGTGCTGTAC AGCTGCCGCG TTATTCCCAT GCGCGGTTCC
TGGCTTGATT TCGACTACGA CCATAAAGAT ATACTCTACG TCCGCATCGA CCGCCGCCGC
AAAATGCCCG CCACCATCCT TTTCAAGGCC ATGGGCATGA GCCGCTCTGA CATTCTGGAG
TACTTCTACA AAAAAGAATA CTACACGCTT GAAGACGACG GCCGTCTGAT GTGGGAACTG
GACAAAGACC TGTACCGCAA GGACGTGGCC TATGCCGATG TGGCCGACGG CGAAGGCAAG
GTCATCGCCA AGGCCGGCAA ACCCTACACC AAGCGTTCGT GGCGCCTGAT GCTCGAAGCA
GGCATTCCCG CGGTTGAAGT CGCCCCCGAC TACATCGCAG GCATGTTTCT GGCCGAAGAC
ATCGTGGACG AAGCAACCGG CGAAGTGCTG GCAGAAGCCG CCGACGAGAT CACTCTTGAC
CTCATCGACC GTCTGCGTGA ATGCAGCATC AAGCGCGTGC CCGTGCTGCA CACCAAAGGC
AGCGACACGT CTTCCTCCAT CCGCGACACC CTGCTGCTCG ACAAAACTGC CGATCAGGAA
CAGGCCCGTG TGGAAATTTA CCGCAGACTG CGTCCCAGCT CGCCCCCCAC ACCCGAGATT
GCCAGCACGT TCTTCGAGAA CCTGTTCCGC AATCCCGATT ATTACGACCT GTCGCCCGTG
GGACGGTACA AGCTCAACCA GCGTCTGGGT CTGACCACCA CGCAGGAACG CGTGCTGACC
GATGAAGACA TCCTTACCGC CATCCGTGTG CTCAACCACC TGAAGGACAC ACACGGCCCT
GCGGACGATA TCGACCATCT GGGCAACCGC CGCGTGCGTC CTGTGGGTGA ACTGGTGGAA
AACCAGTACC GCATCGGCCT TGTGCGCATG GAACGTGCCA TCAAGGAACG CATGAGCCTG
CAGGAAGTCT CCACGCTGAT GCCGCACGAT CTCATCAACC CCAAGCCTGT GCAGGCAGTG
CTGAAGGAAT TCTTCGGCAC CTCGCAGCTG TCGCAGTTTA TGGACCAGAC CAACGCCCTT
TCCGAAGTGA CGCACAAGCG GCGTCTTTCC GCTCTGGGCC CCGGCGGTCT TACCCGCGAA
CGCGCAGGCT TTGAAGTGCG TGACGTGCAT ACGTCGCACT ACGGCCGCAT CTGCCCCATT
GAAACTCCTG AAGGTCCGAA CATCGGCCTT ATCGTTTCGC TGACCACCTA TGCCAAGGTG
AACGACTTCG GTTTCATCGA AACCCCGTAC CGCGTTGTGC GCGACGGACA GGTGACCGAC
GAGGTCAAAT ACCTCGACGC ATCCAGCGAA CACGGCGAAG TGGTGGCGCA GGCCAACGCG
CGTCTTGATG GCGATCACCG GTTCGTGGAC GAATTCGTAA CCACCCGTGT GCGTGGCGAC
GTTATCATGT CCCCGCGCGA AGAAGTCACC CTCATGGACA TTTCGCCCAG CCAGATGGTT
TCCATCTCCG CTGCGCTGAT TCCGTTCCTT GAGCATGACG ACGCCAACCG CGCACTCATG
GGCTCCAACA TGCAGCGTCA GGCAGTTCCG CTGCTGCGCA GCACCAAGCC CATCGTGGGT
ACCGGTATGG AAGCGGACGT GGCCCGCGAC TCCGGTGCAT GTATCATCGC AGAGGCAGAC
GGTGTCGTGC GCTACGCCGA CGCAGACCGC ATCGTGGTTT CCTACGAAGG CGACCTGTAC
CCCAGGACGG GGGGCGTGCG TTCGTACGAC CTGCAGAAAT ATCACAAGTC CAACCAGAGC
TCGTGCTTCG GACAAAAGCC CCTCGTAAGC CGCGGTCAGG TTATCCGCAA AGGTGACGTG
CTGGCTGACG GTCCCGGTAT CGAAGACGGC GAACTGGCGC TGGGTAAAAA CCTTGTGGTG
GCTTTCATGC CCTGGTGCGG TTACAACTTC GAAGACTCCA TCCTCATCTC CGAACGCTGC
GTGAAGGAAG ATGTCTTCAC CTCCGTGCAC ATCGAGGAAT TTGAAGTTGT CGCCCGTGAC
ACCAAGCTGG GCCCCGAAGA AATCACCCGC GATATTCCCA ACGTGGGCGA AGACATGCTG
CGCAACCTTG ACGGCAGCGG CATTATCCGC ATCGGCGCCA ATGTAAAGCC CGATGACATT
CTGGTGGGCA AAATCACTCC CAAGGGTGAA ACACAGCTTA CGCCGGAAGA AAAACTGCTG
CGCGCCATCT TCGGTGAAAA GGCCCGCGAC GTGAAAAACA CGTCGCTGAA GGTTCCGCCG
GGAATCGAGG GTACTGTCAT CGACGTCAAG CTGTTCAACC GCCGTTCCGG CGAAAAGGAC
GAGCGCACGC GCAACATCGA AGATTACGAG CTGGCACGGC TGGATCAGAA AGAGAAAGAT
CACATCCGCG CACTGACCGA AACCACCCGT GAAAAGCTGG CACCCGTTGT GGTGGGCAAG
CAGCTTGCTT ACGGACTGGC CGGGCAGAAA AAAGGCGAAG TCATCGCCGA GGCAGGCCAG
ACCCTGACCG CGGAAATGCT TGAAGGTCTG CCGGTGAAGA AGCTCTCCGG CCTCTTCAAG
AGCAAAGACA CCAACGAGGC CGTACAGCAG GCGCTGGAAT CATACGATCG TCAGATCGAG
TTCATCAACG CCATGTACGA ATCCAAGCGT GAAAAAGTGA CCGAAGGCGA CGACCTGCCC
CCCGGCGTCA TCAAGATGGC CAAAGTGCAC ATCGCCGTTA AGCGTAAGCT GAACGTGGGT
GACAAAATGG CAGGCCGCCA CGGTAACAAG GGTGTCGTAT CCTGCATACT GCCGCAGGAA
GACATGCCCT TCTTCGCCGA CGGCCGCCCC GTGGACATCG TGCTCAACCC GCTGGGCGTT
CCCTCCCGTA TGAACATCGG GCAGATTATG GAAACGCACC TGGGCTGGGC CGCAAAGGAA
ATGGGCCGCA AACTGGCGCT GATGCTGGAA CACGGTCAGG ATCTTGCGTC CGTGCGCGAA
CAGGTGAAAA CAGTGTTCGC GTCCGATGCC ATTTCCTCCG AGGTGGACAA CATGGACGAC
GAGACCTTTG TCCGGTCCGT GCGCAGACTG CGCGACGGCA TTGTGACCAA GACTCCCGTG
TTCGACGGTG CCACCGAAGA GCAAATCTGG AGCTGGATGG AGCAGGCAGG GCTTGCCAAC
GACGGCAAAA CCGAGCTGTA CGACGGCCGC ACCGGTGTCC GGTTCCACAA CCGTGTCACC
ACGGGTGTCA TGTACATCCT TAAGCTGCAC CACCTTGTTG ACGAAAAAAT CCACGCCCGT
TCCACCGGCC CCTACTCGCT TGTCACCCAG CAGCCGCTGG GCGGTAAGGC TCAGTTCGGC
GGCCAGCGTC TGGGTGAAAT GGAAGTGTGG GCACTGGAAG CATACGGTGC CGCATATCTG
TTGCAGGAAT TCCTCACGGT CAAGTCCGAC GACGTGACCG GCCGAGTGAA GATGTACGAA
AAGGTCGTGA AGGGTGACAA CTTCCTTGAA GCAGGTCTGC CCGAGTCCTT CAACGTTCTG
GTGAAGGAAC TCATGTCTCT GGGCCTTGAC GTCACCCTGC ATCAGGAAGA AGGCAAAAAA
CGCACCAAGC GTGCGGGAAT GACCTTCGGC GACGGCACCA GCTACTAG
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| Protein sequence | MGQLTKKFGK IEVTLPIPHL LNLQVDSYKK FLQEGAAALA PDEGLEGVFR SVFPIEDFNR
TASLEYVSYE IGEPKYDQAE CISKGLTYEA PIRIKVRLVV YDVDEDSENR TIRDIKEQDI
YFGTLPLMTE KGTFIINGTE RVIVNQLQRS PGIIFEHDAG KTHSSRKVLY SCRVIPMRGS
WLDFDYDHKD ILYVRIDRRR KMPATILFKA MGMSRSDILE YFYKKEYYTL EDDGRLMWEL
DKDLYRKDVA YADVADGEGK VIAKAGKPYT KRSWRLMLEA GIPAVEVAPD YIAGMFLAED
IVDEATGEVL AEAADEITLD LIDRLRECSI KRVPVLHTKG SDTSSSIRDT LLLDKTADQE
QARVEIYRRL RPSSPPTPEI ASTFFENLFR NPDYYDLSPV GRYKLNQRLG LTTTQERVLT
DEDILTAIRV LNHLKDTHGP ADDIDHLGNR RVRPVGELVE NQYRIGLVRM ERAIKERMSL
QEVSTLMPHD LINPKPVQAV LKEFFGTSQL SQFMDQTNAL SEVTHKRRLS ALGPGGLTRE
RAGFEVRDVH TSHYGRICPI ETPEGPNIGL IVSLTTYAKV NDFGFIETPY RVVRDGQVTD
EVKYLDASSE HGEVVAQANA RLDGDHRFVD EFVTTRVRGD VIMSPREEVT LMDISPSQMV
SISAALIPFL EHDDANRALM GSNMQRQAVP LLRSTKPIVG TGMEADVARD SGACIIAEAD
GVVRYADADR IVVSYEGDLY PRTGGVRSYD LQKYHKSNQS SCFGQKPLVS RGQVIRKGDV
LADGPGIEDG ELALGKNLVV AFMPWCGYNF EDSILISERC VKEDVFTSVH IEEFEVVARD
TKLGPEEITR DIPNVGEDML RNLDGSGIIR IGANVKPDDI LVGKITPKGE TQLTPEEKLL
RAIFGEKARD VKNTSLKVPP GIEGTVIDVK LFNRRSGEKD ERTRNIEDYE LARLDQKEKD
HIRALTETTR EKLAPVVVGK QLAYGLAGQK KGEVIAEAGQ TLTAEMLEGL PVKKLSGLFK
SKDTNEAVQQ ALESYDRQIE FINAMYESKR EKVTEGDDLP PGVIKMAKVH IAVKRKLNVG
DKMAGRHGNK GVVSCILPQE DMPFFADGRP VDIVLNPLGV PSRMNIGQIM ETHLGWAAKE
MGRKLALMLE HGQDLASVRE QVKTVFASDA ISSEVDNMDD ETFVRSVRRL RDGIVTKTPV
FDGATEEQIW SWMEQAGLAN DGKTELYDGR TGVRFHNRVT TGVMYILKLH HLVDEKIHAR
STGPYSLVTQ QPLGGKAQFG GQRLGEMEVW ALEAYGAAYL LQEFLTVKSD DVTGRVKMYE
KVVKGDNFLE AGLPESFNVL VKELMSLGLD VTLHQEEGKK RTKRAGMTFG DGTSY
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