| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2960 |
|---|
| Symbol | |
|---|
| ID | 3757965 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2940224 |
|---|
| End bp | 2943688 |
|---|
| Gene Length | 3465 bp |
|---|
| Protein Length | 1154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637783861 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_389449 |
|---|
| Protein GI | 78358000 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG AGAAAGGTGT GATTCGCAGC AGCTTTTCCG CCGGTATCAT CCGGCTTCTC
GCAGCCGCTC TGGGGCTTGT CCTGCTTCTG CCCGCCACAG GCAGGGCCGC TTCGTGGTAT
TGGGGCGCCC ACCCGCAAAA AGAACGGCTG GTCATAGAGC TGGACAGGCC GGTAGGCCCT
GCCGCCGTTT CGCGCACCGG CAGACGCACC GTCACAGTAC TGCTGCCCGC ACCCGAAACG
CTGAGCCGCA GCGCCGACAG CCCCGCCACG GACAGCGCAG CGCTGCTCGG CACGGTACGC
AGCGCCGGCA ACACCATATC CATTGCCACA CGCACAGATG CCTTCGGTTA CATAGTGCTG
CCCCGGCAGG GCAACAGGCT TGTCATCGAT TTTTTTGCAG ACCCTGTCGG TACACGCTGG
CGCCCGGCGG AACAAGCCGC CCCCGCGGAA CAGCCTCCCG CTGCCGCGGC CGCCGCACAG
GGCAGAAAGA CCGCATCTCC AGCCGGTCCG GCGGCCCGCG CCGCCTCGCC CTCTCCGGCA
GAAAGACCAT CGGCCCGCAA CTCTTCCGGC AACGCAGGAC GCGCGCTGAC TCCGCCTGCG
GCACAGCAGA GCACAGCCCC GTCCGGCACT GCCCGCACCC CTGTTGTGCA GCCGCCGGCA
GCTGCCGCCC CTTCCTCACC GGTAGCAGAG GAAACACTGG ACGACCGCCC CGCCCTGCAG
GCAGCCGCCG ACAACCTTAT CAAAGCCGCA CAGAAAATTT CCGGCGAACT TAACGACCAG
CTGAAAAACG GACTTTCCGG CCGTAATGCC ACGCCGCAGA GCAGCCCCGC ACCCGTCAAC
GCCACGCCGA CGGAAATACA GCAACGGGGC GGACAGGCTC CTTCCGCCGG TACGCAGACA
CAGGAACAGG CTCCTCAGCC GTTTTTTTCC GTGCCGTACA CATTCCGCTC GCGCATCAAC
ACCGGCGGGC CCGAAGCATG GAAACCGGTA CCGCCCAAAC TGACCCTGCC TGTGGAAGTG
CTGCCCGTTG CAGAGGACGA CACTGCTCCC CCGCAGACGG CAGAAAATAC CGTACGCGGC
GTCATCGGCC CCGCCACGGG GCCGTACCTT GACGAGGCGG GGGCTGCACC CGCGCCATCT
GCCGCACAAA ACCTGCAGGC AGACAATGCG GAAAGCACCC CACCGCAAAC CGCACAGCCG
CCTGTGGCCG CTCCCGCAGC CCGTCAGCCC GTGACGGATA CTGCGCTGCC CGCGGCGCAG
GGTGACAGCG CAGGCGGTAC CATATCGCAG GAAGAACGCA CAGCGCCGCC CTATCCCGAG
GCTCCGGCGC CGGATGTCAG CACCGGCAGT GTCACCGCCC CTTCAGGTGA TGCGGTACAG
GTGCCCCCCC GCGAGCTTGA AAAAGTTTCC GGCACGGAAA AGGCCGCTCC GCAGGAAGAA
ATCGTCTACG TGGACGAAGA CGGCAACCCG GTGGACCCGC CGCCCACTTC GGCCGAGCTG
CTTTTCAGGG CCAAGGCCGC CATGAACAAC GGCGACCAGC AGACCGCGCT TGAAACTCTG
GAGGAGCTGC GCCGCCGCAA TGATCTGGAG CCGGAACTGC AGGAGGAAAT GCTCTACCTG
CTGAGCGACG TGCTGTATTC GCGCGGAAAA GATGACCTGC TGGCCAGTTA CGACACCATC
ACCAGCGCGC TGACCGAGGC CATGAACTAC AACCTGTCTT CCGAACGCAT CCCCGGCGCG
CTGCTGCGTA TGGGGCTTAT CAACCTGAAG ATAGGCAACA TCCGCGAGGC GGAAGCATAT
TTCAACATAC TGAAGCGCGA ACACCCCGAC GATGAGAATA TTCCGCTCAT CTACTATTAC
TGGGGCGACC ACTTTTTCAA TAAAGGCCAG TACCAGAAAG CCGCCGACCA GTTCCAGTTT
GTGGTGCAGA ACCATCCGGA TTCCCGTTTT GTCCGCGAAT CGTCCGTGGG GCTGGCCCGT
GCGCTCTACC GTCTGGGCTA TTATGATCAG GCGTACCAGA TTGTGGACTA CATCGAAAAA
CGCTGGCCGC GTTTTTATGT GGAGTACCCG CCGTTTCTGA ACATGATGGG CGATGTGTCA
TACCGCATGC AGAAGTACGA AAAAGCCCGC ATCCATTACT GGACATATTA TAACATCGAC
CCCGACGGTG AAGAGGCCGA CCTGATTCTG GCCAGGCTGG GCGACATATA TCTGCGGCAG
GACAAAACCG ATGCGGCCCG TGAAGTGTAT GAAGAGGCGG CGCGCAAATT TCCCGACAGG
GACGGCGGTC TGATCTCGCT CATGCGTCTG GCCGAGGAAG GCATATACGA CACCCCCAGC
ATCGGTGACA TGTTCACCGT GTTTGACAGG CCGTTTTCTC TGCGTCCTCG GGATATCTAC
CTGAAAATAA TCAACGAACA CCCGCAGAGT GATCTTGCGC CGCTGGCACA GGTCAAGCTG
GCCATGTGGT ATCTGTGGAA CAGGCAGTAC CCCGAAGCCA TGGCAGCCGC CACGGACTTT
GCCGAAAAAT ACCCCGCGGG CGAGCTGCTG CCCCGTGCGC GTGAAGTGGC CATGAAAGCC
TTTAACATTC AGGTGGCCGA CAACATAGAC CAGAACAACT ACGCGCGGAT AATGCAGGTA
TGGGATCAGT TTCCCATCGT GCGCGGGCAG GAAGGCGAGC TGACTCCGGA AAGCCGTATA
GCTCTGGGCA TGAGCATGTC TGAACGGGGT GATCCGGCCA AGGCTCTGGA AATCATCGAC
CCGTTTTTCC GCGGACTCAA AGTGCCGAGG TACAGCGAAA TGGCTCTCAA TCTGGCCCTT
TCCATATACC TGCAGCACGA ACAGTGGGAC GACATCAAAG ATCTGGCAAA ACGCACCGAG
CTGTGGGAAC TGAATCCGGA AGCGCAGCGC CAGCTTGATT ATGCCCGTGC TCTGGCCATG
GAAAACACAG GAGAATCCGA AGAAGCCACG GCGTTGTGGA AACGCCTGAA GACGGATCAG
GATGTACCCC AGAGTCAGGA AGCCTACACC CAGTATTTTC TTGCGCGCGA TGCCGAAAAG
CGCCGCGATC TTGGTGAAGC CTACAAACTG GCACAGGGAG CCCTGCGCAA TTTTACCGAG
ATGGCCGAAA AAAATCCGGC ACAGGCGGAT AACGGAAAAA TCAAAGACCT GCTGAGCCTG
CTTATGGATA TCACCGAAAG CTCCGGCAGA GCACGGGAAT CGCTGGACTG GGCCAAACAG
TACGCCGAAC ATGTGAAACC GGGCGACGTG GACTATCCTG CACTGCGCTA CCGTCTGGCA
CGGCTGTATA AAAAGACTTC AGACGTTGAG CAGTGGCGCA CCATTCTGAC CGAACTGCGG
GACAACAACC CGCAGTCGCT GTACGGCCGC ATGGCCGCTT CGGAACTGCG AACCCATGAA
CTTTCACAGG ACGCGGCCCA GTTTTCCCCC ACGGGAAGGC TGTAA
|
|---|
| Protein sequence | MAKEKGVIRS SFSAGIIRLL AAALGLVLLL PATGRAASWY WGAHPQKERL VIELDRPVGP
AAVSRTGRRT VTVLLPAPET LSRSADSPAT DSAALLGTVR SAGNTISIAT RTDAFGYIVL
PRQGNRLVID FFADPVGTRW RPAEQAAPAE QPPAAAAAAQ GRKTASPAGP AARAASPSPA
ERPSARNSSG NAGRALTPPA AQQSTAPSGT ARTPVVQPPA AAAPSSPVAE ETLDDRPALQ
AAADNLIKAA QKISGELNDQ LKNGLSGRNA TPQSSPAPVN ATPTEIQQRG GQAPSAGTQT
QEQAPQPFFS VPYTFRSRIN TGGPEAWKPV PPKLTLPVEV LPVAEDDTAP PQTAENTVRG
VIGPATGPYL DEAGAAPAPS AAQNLQADNA ESTPPQTAQP PVAAPAARQP VTDTALPAAQ
GDSAGGTISQ EERTAPPYPE APAPDVSTGS VTAPSGDAVQ VPPRELEKVS GTEKAAPQEE
IVYVDEDGNP VDPPPTSAEL LFRAKAAMNN GDQQTALETL EELRRRNDLE PELQEEMLYL
LSDVLYSRGK DDLLASYDTI TSALTEAMNY NLSSERIPGA LLRMGLINLK IGNIREAEAY
FNILKREHPD DENIPLIYYY WGDHFFNKGQ YQKAADQFQF VVQNHPDSRF VRESSVGLAR
ALYRLGYYDQ AYQIVDYIEK RWPRFYVEYP PFLNMMGDVS YRMQKYEKAR IHYWTYYNID
PDGEEADLIL ARLGDIYLRQ DKTDAAREVY EEAARKFPDR DGGLISLMRL AEEGIYDTPS
IGDMFTVFDR PFSLRPRDIY LKIINEHPQS DLAPLAQVKL AMWYLWNRQY PEAMAAATDF
AEKYPAGELL PRAREVAMKA FNIQVADNID QNNYARIMQV WDQFPIVRGQ EGELTPESRI
ALGMSMSERG DPAKALEIID PFFRGLKVPR YSEMALNLAL SIYLQHEQWD DIKDLAKRTE
LWELNPEAQR QLDYARALAM ENTGESEEAT ALWKRLKTDQ DVPQSQEAYT QYFLARDAEK
RRDLGEAYKL AQGALRNFTE MAEKNPAQAD NGKIKDLLSL LMDITESSGR ARESLDWAKQ
YAEHVKPGDV DYPALRYRLA RLYKKTSDVE QWRTILTELR DNNPQSLYGR MAASELRTHE
LSQDAAQFSP TGRL
|
|---|
| |