| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2832 |
|---|
| Symbol | |
|---|
| ID | 3757855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2818097 |
|---|
| End bp | 2820334 |
|---|
| Gene Length | 2238 bp |
|---|
| Protein Length | 745 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637783733 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_389322 |
|---|
| Protein GI | 78357873 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.34987 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA CCCAGCTGCC TTCGCTTTCG CGGACCATGT CTGTCAAGCT TATCCGCTGG
ATGTGCGTGC TGGGAATGCT CTGCGCGCTT TTTCTGGCCG CATTCTCCTA CCAGAGCCGC
ATCAGCGAAT TCGAAGCGCG CAGCCGCTAC AACGCCGGAA TCATCGCCAA CTACATCAAT
GAATATATGC AGGGTGCCTA CGCCGCGCTG CAAAACACCA TGGACGAACC CGACGGCACA
CTGCCGCACA CCATGACCAT GCTGAAAAGG CTGTACCCGC AGTTCACCAG AGTCATGCTG
GTGGACGGCA ACCGCAAAAT AACCACCAGT GTGCCCCCGG CACTGCCGGG GCAGGAACTG
GCTGTCCCTC TGCTGCCGGT TGCTGTGGCC GGCGGAGTCA TCAGCCAGCC GCAGGGCATG
ACCGATGCCG GAGACATGGG GGTGTATCTG GGCGTAAAGC AGCAGGACGG CTCCATGCTG
GTGGCCGAGC TGCACCTGCG GGCCGTGCAG AAGCATCTTG CAGAGCTGTT TCCCAAAGAA
TCAAGTCTGC TGGTACTGAC AGATGCATGG GGCAACACCA TGGTGCACCC CGACTGGGCC
ATGGTGCGGC GTTTTGCCAA CATAGGTCTG CAGCCGGTCT TTCATGCCAC CCGCGACACG
GGATCATTCT TCGGCAAGAC GGAATCCGAA GGCCGCCTGT TGCAGGTTTC GGCCATGCGC
ATCGCTTCCA CAGGGTGGGT CATTCTGCAC ATAATGCCCA CCATGAATGT GATCACGGGC
ACCGCGCGCG ACATACTGGC CTTTGTGGCG GTGTTTGCCG CGCTGTATAC AGTTCTCGCC
GCATCGCTGC TGTACGAGCT GCAGCGCGGG CTTGCGCGCC CGCTCAGAGA ATTCACCAGA
ACCATCAAGG ACATTTCTGT GGGAGCATGG CCGGGCAGAT CCGGCAGCCC GGAAACCTAT
GATGAATTTC AGGAAATGCG CCTTGAATTT GACAACATGT CCGCAGCGCT GGAGGAACGC
GAGGCGGATC TCACCCGGGC GCACCTTTTT GTCCAGAACA TCATAGACGC CATGCCTTCC
GTTGTTGTGG CTCTGGATAC ACAGGGGCAT GTCACCCATA TGAACAGGCG CGCGGCAGAA
CGCATGCAGC ACAACGCACC CGCCGGCAAA ACCCTGCTGC CCATCGAAGC CATTGCCCCG
CAGATTTCAC CGTTTCTGCC GCAGCTGCAC CATGCCCTGC ACACCCGCAC CCCCCTTGAG
CTGCACCTGA CAGGCAAAGA CGCCGACGGC AGCACCGTGC ATGAAGAAGT GCAGCTGGCC
CCGCTGCCCG GCGAATCCGA AGGCGGCGTA CTGCGCATAG ACGATGTGAC GCAGCGCATC
CAGCTGGAAG AAATGATGAT TCAGACTGAA AAAATGATGT CTGTGGGCGG GCTTGCAGCG
GGTATGGCCC ACGAGATCAA CAACCCGCTG GGTGCCATAC TGCAGGGAAC CCAGAATATC
CGCAGGCGCA TCACCGACAC GCTGCCTGCA AATATCGCTG CCGCACAGAA GGCGGGGTGC
TCCATGCAGG CCGTTCAGGC CTATATGCAC GAAAGAAAAA TTCCCGATTT TCTGCAGGGC
ATACAGGAAT CCGGCCAGCG TGCCGCCAAC ATAGTATCAA ATATGCTTAC ATTTTCACGC
CGCAGCGATG CCAGCCCCAC CACAGCCAAT CTGCATGCGG CGCTGGACCG CACGGTACAG
CTGGCTTCCA GCGACTATGA TCTGAAAAAA AAATACGACT TCAGGCAGGT GCACATCGTC
CGCGAGTTTG CGGACGATGT GGGAGACATC ATCTGTCACC CCATTGAGCT GGAGCAGGTG
GTGCTCAACC TGCTGCGCAA TGCCGCCCAG TCCGTGGCCA CGCAGGGAGC GGCACTGAAA
GAAACGGGCG CGGAAGAGTA CAGGCCCACC ATACACCTGC GCACACGCAG AGAAGACGAC
TGGGCAGTCA TCGAAATAGA AGACAACGGC ACCGGCATGT CCGCCGCCAC CCGGAGGCGC
ATATTCGAGC CGTTCTTTAC CACCAAGCAG GCGGGTCAGG GCACCGGACT GGGGCTTTCG
GTCTCATATT TCATCATTAC CAAAAACCAT GGCGGCACCC TGACGGTGGA TTCGCAGGAA
GGAGAAGGAA CCACCTTCAC CATCCGCATT CCTGTAAACG GACCGGCCGC CGTGCGCACG
CAGGATAGCT TCACCTAA
|
|---|
| Protein sequence | MKTTQLPSLS RTMSVKLIRW MCVLGMLCAL FLAAFSYQSR ISEFEARSRY NAGIIANYIN
EYMQGAYAAL QNTMDEPDGT LPHTMTMLKR LYPQFTRVML VDGNRKITTS VPPALPGQEL
AVPLLPVAVA GGVISQPQGM TDAGDMGVYL GVKQQDGSML VAELHLRAVQ KHLAELFPKE
SSLLVLTDAW GNTMVHPDWA MVRRFANIGL QPVFHATRDT GSFFGKTESE GRLLQVSAMR
IASTGWVILH IMPTMNVITG TARDILAFVA VFAALYTVLA ASLLYELQRG LARPLREFTR
TIKDISVGAW PGRSGSPETY DEFQEMRLEF DNMSAALEER EADLTRAHLF VQNIIDAMPS
VVVALDTQGH VTHMNRRAAE RMQHNAPAGK TLLPIEAIAP QISPFLPQLH HALHTRTPLE
LHLTGKDADG STVHEEVQLA PLPGESEGGV LRIDDVTQRI QLEEMMIQTE KMMSVGGLAA
GMAHEINNPL GAILQGTQNI RRRITDTLPA NIAAAQKAGC SMQAVQAYMH ERKIPDFLQG
IQESGQRAAN IVSNMLTFSR RSDASPTTAN LHAALDRTVQ LASSDYDLKK KYDFRQVHIV
REFADDVGDI ICHPIELEQV VLNLLRNAAQ SVATQGAALK ETGAEEYRPT IHLRTRREDD
WAVIEIEDNG TGMSAATRRR IFEPFFTTKQ AGQGTGLGLS VSYFIITKNH GGTLTVDSQE
GEGTTFTIRI PVNGPAAVRT QDSFT
|
|---|
| |