Gene Dde_2725 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2725 
Symbol 
ID3757748 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2726144 
End bp2728339 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content58% 
IMG OID637783627 
Producthelicase RecD/TraA 
Protein accessionYP_389216 
Protein GI78357767 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01447] exodeoxyribonuclease V, alpha subunit
[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.115291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGATC CCGCCCCGCA GGAAGAGATG GACGCACAGG TCGAGCTGGT AGGCACACTG 
GAGCGTGTGG TTTTTCACAA TGAGGAAAAC GGATACACGG TGTTCCGGCT TAAGGTGCAG
GGCAACCGCG ATCAGGTGAC GGTGGTGGGC CACATGGTGG AGCCGCAGGC CGGTGTGGCG
TTGTCGCTCA AGGGGGACTG GACGGAAAAT CCCCGTTTCG GCCGTCAGTT TCAGATGTCC
AGCTTTGATC AGGTGCTGCC TGCCACGCTG GAAGGCATCC GGCATTATCT TTCTTCGGGC
CTTATCAAAG GCGTGGGGGA AAAGATGGCG GGCCGCATCG TTGAAACCTT CGGCACCGGG
ACATTCAACG TGCTGGATGA CGAACCGGAG CGCATGCTGG AGGTGGAGGG CGTCGGGCAG
AAGCTTATGG AGCGCATCCG CGACGGATGG GCCGAGCACA GGGGTATCCG CGACCTCATC
ATGTTTTTGC AGCCCCACGG GGTAAGCACC TCGTACGCGG TGCGCATATA CCGGCATTAC
GGTCAGCAGG CTCTGGCCGT GGTGCGCGAA AACCCCTACC GGCTGGCCAT GGACATACGC
GGCATAGGTT TTCTGACCGC AGATGCCGTG GCGCAGAAAC TGGGTTTTGC CCGCGACTGC
GACCTGCGTG CGGAGGCCGG TCTGCTCTAC ATGCTCATGC GTCTGACTGA GGACGGCCAT
GTGTACTACC CCCGCGACGA ACTGGTCATA CAGACTTCGG ACAAGCTGGA AATTTCCGCG
CCCATGGTCG ATCAGGCCAT AGACAACCTG CAGCTGGAAG AGCGCATCGT TCTGGATGAG
ACGGACAGCG GTCAGGCTGT GTATCTTTCG CGGTATCACC GGTACGAATC TGGCATATCG
CATTATCTGC GCCGTATTCT GCATTCACCC AAATCCGTGT CCGGCGGCGA CGAGGATGCG
CTGGTGGACG AGATAGTCGC AGGACTGGAC ATCACGCTGG CCGAAGAGCA GGAGCAGGCC
GTGCGCACCG CGGCCCGCAG CAAAGTAATG GTGCTTACCG GCGGTCCGGG TACAGGCAAG
ACCACAATCA TCAACGCCAT TATCAAAGTG TTCGCGGCCA TGAAGGCGCG CATTCTGCTG
GCTGCTCCCA CGGGAAGAGC GGCCAAACGC ATGAGCGAAA CCAGCGGGCG CGAGTCCAAG
ACCATTCACC GGCTTCTGGA ATACAGCCCG CGCGAGGACG GTTTTTCGCG CAACGAGAAC
AATCCGCTGG CCTGCAGCCT GCTGGTGGTG GATGAAGCCT CGATGATGGA CACCATGCTC
ATGTACCATC TGCTTAAAGC GGTGCCGCTG GGGGCCACTG TGGTTTTTGT GGGTGATGTG
AATCAGCTGC CTTCCGTCGG GCCGGGCAAC GTGCTGCAGG ATGTCATCCG GTCGGGCGTG
GTGGACGTGG TGGAACTGGT GGAAGTGTTC CGGCAGGCGC AGGAAAGTGA AATAATCTGC
AACGCACACC TTATCAATCA GGGCGAGATT CCGTCGCTGG AATCTTCCAA AGACCGGTTG
AGCGATTTTT ATTTCATCAG GCAGGAAGAC CCGGACCGCG TGGCCGATAT GGTTGTCGAT
CTGGTGAAAA ATCATATTCC CCGCAGATTC CGGCTGGACT CCATAAATGA TATTCAGGTG
CTGACGCCCA TGCACAAGGG AACAGCCGGC GCCGCCAACC TGAATACGCG GCTGCAGGAG
GCTCTTAACC CCAAAACGCT GGTCATTCAG CGCGGCGAGC GGCAGTTCCG GCTGGACGAC
AAAGTGATGC AGATACGCAA TAACTACGAA AAAGATGTCT TTAACGGAGA CATAGGGCGC
ATCTGCAGGC TTGATAAGGA AGAGCGCGAG CTGACTGTCC GGTTCGACGA AGAACGTAAT
GTAGTGTACG AATTTTCAGA GCTGGATGAA CTGGTTCCTG CCTATGCCAT ATCAGTGCAC
AAGTCGCAGG GGTCGGAATA TCCCGCCGTG GTCATGCCTG TGCTGACACA GCACTATGTG
CTGCTGCAGC GCAACCTGCT GTATACCGGT GTCACCCGCG GCAAGCGGCT GGTGGTGCTG
GTGGGTTCGC AGCGCGCGCT GGCCATTGCC GTCAAAAATA ATAAGATGCA GAAACGCTTT
ACGTATCTGG CGCAGCGCCT GGCCCGCGGG GTATGA
 
Protein sequence
MQDPAPQEEM DAQVELVGTL ERVVFHNEEN GYTVFRLKVQ GNRDQVTVVG HMVEPQAGVA 
LSLKGDWTEN PRFGRQFQMS SFDQVLPATL EGIRHYLSSG LIKGVGEKMA GRIVETFGTG
TFNVLDDEPE RMLEVEGVGQ KLMERIRDGW AEHRGIRDLI MFLQPHGVST SYAVRIYRHY
GQQALAVVRE NPYRLAMDIR GIGFLTADAV AQKLGFARDC DLRAEAGLLY MLMRLTEDGH
VYYPRDELVI QTSDKLEISA PMVDQAIDNL QLEERIVLDE TDSGQAVYLS RYHRYESGIS
HYLRRILHSP KSVSGGDEDA LVDEIVAGLD ITLAEEQEQA VRTAARSKVM VLTGGPGTGK
TTIINAIIKV FAAMKARILL AAPTGRAAKR MSETSGRESK TIHRLLEYSP REDGFSRNEN
NPLACSLLVV DEASMMDTML MYHLLKAVPL GATVVFVGDV NQLPSVGPGN VLQDVIRSGV
VDVVELVEVF RQAQESEIIC NAHLINQGEI PSLESSKDRL SDFYFIRQED PDRVADMVVD
LVKNHIPRRF RLDSINDIQV LTPMHKGTAG AANLNTRLQE ALNPKTLVIQ RGERQFRLDD
KVMQIRNNYE KDVFNGDIGR ICRLDKEERE LTVRFDEERN VVYEFSELDE LVPAYAISVH
KSQGSEYPAV VMPVLTQHYV LLQRNLLYTG VTRGKRLVVL VGSQRALAIA VKNNKMQKRF
TYLAQRLARG V