| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2558 |
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| Symbol | |
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| ID | 3757575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 2573980 |
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| End bp | 2577087 |
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| Gene Length | 3108 bp |
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| Protein Length | 1035 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637783454 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_389049 |
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| Protein GI | 78357600 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACAAT TTCGTCATAG TATACGGTTT GCCGCCCTGC TGGGCACCCT GCTGCTGAGC
GCGGTATTTG CCGGCGTGTC AACGCTGGTG GCCCTGTGGG GTACAAACAG CTTTGCCGAA
GAACAGGAAA AACAAACCGC TGCCGCCGCC CTGAAGGACA CCGTGCTGAT AATGGAAGAC
AGTCTGCGGC ACCTCGGTGA ACAGGCGCAG CTGCTGGCAT GGAGCAACAG GTTGTACAAT
CTGCTCTACG GCGGAAACTC CGGCACGGCG GAACTGCCTG CCGCCATTGT GGAACGGCCC
TATACGGACT TTCAGGCCAT TGTACTGCTT GATCAGGAAG GCCGCTTTCT GTTCGGCAGA
ACGGTTTTTG CCCGCAGGGA CGCAGGGGTA CAGCCGGACA CCCGGCTGCC CGCCCCGCTG
CGTGCCTATC TGGAAACACT GGTGCCGCGC ATTCACAGAG CATCGCCGCA GTCCGGTACC
CGCGGGCTGG CGCGCATACA CGGCGAACTG CACATGCTGG CGGCTGTTCC TGTGCTGACG
GCACGCATGG AAGGCCCCGC CGCCGGCTGG CTGGCGCTGC TACGCAAAAT TGACGAACCG
TACATACAGC AGCTTTCCGC ACGAAGCGGA CTGCGGCTGC AGTTGCACGA AAACACCGCG
ACCGCCCTGC CCGCCCCGCT GGTTGACCTT GCCGCCATCC GGCGGCTGGG CAGTGCCGCC
CCGCCGGTGG TCACGATTTA TGAAGGCGAT ACTTACGCCG GAACAGTGCT GCCGGAACTC
AAGGATGGTC TGCCTGTCGC CGTCACCGGC GTGCGCGTTA ATTCACTGAC ACATATAATC
CGTCAGATTC TTGCAGAAAA TCTTCTGCTC ACCGTTCCCG TTGCTCTGGC AGCGTTCATG
GCCGGATTTA TACTGCTGGA CAGACGCGTG TTAAAACGCA TCAGCAGTCT TGTCTCCGCC
GTCCGGGCTT CCGGCAGCGG CGTGCATGCC GCCGTCAGGC CGTCCGGCAG TGAACTGGAT
GAACTGGAAA TGCTGCTTTC GGCAGCCACG GATACCGCCC TGCGCAACGA GCGTGATACA
GCCCGCATTA TGGATTCGCT TCCTGTGGGG CTTATGGTGA TAGACCCGAA AACACGGGCC
ATCGTATCGC TTAACAGGGC CGCACAGGAG ATGCTCGGAT TTACGGAGGA CGGTCTGCTG
GGCAGAGACT GCAGTTCAGT CGTCTGTCTG GCCACCGACG AACCATGCCC CATGCTCGAC
ACGGCCAACC CGCAGCATCA CGTCATCAGA ACCATGCGCA GAGCCGACAG GACGGAAATC
ACAGCCCTGA AATCCACCGC GCACATAAAT GACGGCAGAA ACGACTTTTT TATGGAAGCC
TTCATGGACA TCACCGATCT GGAGCGTAAA TGGCTTTCGC ACCGCAACGA AGCGCAAAGG
CTTTCCGCAG CCTTTGCAGG GTTGCCCGCG CCGGTAACCA TCATGGATTC GGGCCTTTCC
ATTATTCAGG CCAACAAGGC GTTCTGGCGG ATGACCGGCG CAGGACACAG CGTGCAGAAC
GAAATCACAC CGCTGTCCAG ATTCATCCAT CCCGAAGACC TGCCTTTGCT GGCGGGACTG
GACCGGAGCG CATCGGGCGT ATCGGGCGTA TCGGGCGATG CCGTTGCAGA ACTGAAACTG
CGCATGGTCG ATGCTTCGGA CACGGTGCAC TTTGTACTGA TGCGCATGAC GGCAGATGCG
GCTCCGCGGA CCATCGTATA CGAAGACCTG ACGGCACGGC AGCATTATGA AGAAGAAAGG
ATGCGGCAGG CCTATACCGA CCACCTGACC GGCCTGCCCA ACAGGCAGTA CCTCTATTCA
GCCGGGCTGG AAAAAATGGC CGGCGAAGCC GCTCCGGAAC AGTCTGCGGG GCTGTGTCTT
ATCAACATTC AGGGGCTGGA CGTGGCCAAC AACGCCGCCG GTCTGGCGGC AGGCGATGCC
GTACTGCTGC AGGCCGCGCA GCGCATGGAC AAAGCCAGAG CAGCGGACCA TACGCTGATA
CGGTACGGAG GAGACGATTT TCTCATAGTC ATGGCTGCCC CCTGCACGGC AGATGCCATG
AAAACACTGG CTGAAAAACT GCACGAGGCT TTTGAAACGC CGTTCATGAC AGGCGGTACG
GAATACACCC TGCAGCTGAG CTTCGGCTTT GCCCTGTATC CGGAGCACGG AGACACGCTG
GAAGAACTTA TCCGCAGGGC GGACATGGCC ATGTGCCACA GCCGGTTTCA GGCTGACGGG
CAGTTCTGCC TGTACCACAA ATCACTGGAC ACCCTGCGCC AGTATGATGC CGGAAAGACC
GGCACCCTGC GGACAGCGCT GGAAAACGGT GAATTTCTGG CCCGTTATCA GCCGGTTGTG
GACCTGCGCA GCGGCACCAT CACCGGTGCG GAAGCGCTGG CACGCCAAGT GCTGCAGAAC
GGACACGAAT CGCCGCCCGC CGGATTCAAA CGCAGTGCAG AGCGGAGCGG CATCATCTGG
AACATAGACC TGACCATACT GCAGCAGGCA TGCCGCGACG CAGCCCGCTG GCACACGCTG
GGCATGCCGG CAGCCATTGC GGTCAACATC TCACCTGCAT TTTTTCACCG CCACGACTTT
CTGGCCCATG TGGAAGCAGC CCTGAAGGAT TCGGGGCTGC CTGCCGGGCT GCTGACGCTC
GACATGGAAG AAGCGGTGTA TCTGCATGAC TACCGTAAGG CGCTGGGCAC GCTCGACAGC
CTGAAGCACA TGGGGGTCCG GCCCGCACTG GGCAATTTCG GTACGGGGTA TTCGGCAACG
GCCCATCTGC ACGATCTTGG CTTTGCAGCC CTGAAAATCG ACCATACCAT AGCATCCGCA
CTGCCGGGCG CTCCGGCTGC CGCGTTGCTC CGCTCCGCGG CAGGCGTGGC CGGTTCTCTC
GACATTCCGG CTCTTTCCGG AGGAGTGGAA ACCGAATTCC AGCGTTCGTT TCTGCTGGGG
CTGGGGTACG CCGCCGGTCA GGGGTTCTTA TTTGCCCCGC CGCTGCCCGC CGCACAAATG
GAAAAACTGT TCACGGAACA GCCGCGCTTT TCCGCCGCAC GTTCCTGA
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| Protein sequence | MPQFRHSIRF AALLGTLLLS AVFAGVSTLV ALWGTNSFAE EQEKQTAAAA LKDTVLIMED
SLRHLGEQAQ LLAWSNRLYN LLYGGNSGTA ELPAAIVERP YTDFQAIVLL DQEGRFLFGR
TVFARRDAGV QPDTRLPAPL RAYLETLVPR IHRASPQSGT RGLARIHGEL HMLAAVPVLT
ARMEGPAAGW LALLRKIDEP YIQQLSARSG LRLQLHENTA TALPAPLVDL AAIRRLGSAA
PPVVTIYEGD TYAGTVLPEL KDGLPVAVTG VRVNSLTHII RQILAENLLL TVPVALAAFM
AGFILLDRRV LKRISSLVSA VRASGSGVHA AVRPSGSELD ELEMLLSAAT DTALRNERDT
ARIMDSLPVG LMVIDPKTRA IVSLNRAAQE MLGFTEDGLL GRDCSSVVCL ATDEPCPMLD
TANPQHHVIR TMRRADRTEI TALKSTAHIN DGRNDFFMEA FMDITDLERK WLSHRNEAQR
LSAAFAGLPA PVTIMDSGLS IIQANKAFWR MTGAGHSVQN EITPLSRFIH PEDLPLLAGL
DRSASGVSGV SGDAVAELKL RMVDASDTVH FVLMRMTADA APRTIVYEDL TARQHYEEER
MRQAYTDHLT GLPNRQYLYS AGLEKMAGEA APEQSAGLCL INIQGLDVAN NAAGLAAGDA
VLLQAAQRMD KARAADHTLI RYGGDDFLIV MAAPCTADAM KTLAEKLHEA FETPFMTGGT
EYTLQLSFGF ALYPEHGDTL EELIRRADMA MCHSRFQADG QFCLYHKSLD TLRQYDAGKT
GTLRTALENG EFLARYQPVV DLRSGTITGA EALARQVLQN GHESPPAGFK RSAERSGIIW
NIDLTILQQA CRDAARWHTL GMPAAIAVNI SPAFFHRHDF LAHVEAALKD SGLPAGLLTL
DMEEAVYLHD YRKALGTLDS LKHMGVRPAL GNFGTGYSAT AHLHDLGFAA LKIDHTIASA
LPGAPAAALL RSAAGVAGSL DIPALSGGVE TEFQRSFLLG LGYAAGQGFL FAPPLPAAQM
EKLFTEQPRF SAARS
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