| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2360 |
|---|
| Symbol | |
|---|
| ID | 3757376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2381315 |
|---|
| End bp | 2382763 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637783256 |
|---|
| Product | type II/III secretion system protein |
|---|
| Protein accession | YP_388852 |
|---|
| Protein GI | 78357403 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCTT TCAACAAAGC CACAACGCTT CTGGTATGTT TCCGCCATTT TCCGGTACTG
GCTGCGGTGC TGCTGAGCGC CGTATGCGCG CAGGCTGCCA TAGTGCCCGC CGCAGTGCAG
CTGGCCGCCG GCAAATCGGT CGTTCTTGAA ACCGCATCCC CTGTCCGGCG GGTTTCAGTG
GCTGCGCCGG AGGTGGCACA AGTGCTGGTG CTCTCTCCCA CACAGGTCTA CGTAACCGGC
GTAAAGCCGG GCGGCACCAC ACTGACGCTG TGGAACGCTG CCGGTGCGGT GTCTCATGTA
TTCGACATTC AGGTTTCACC GGATATCGCC CGCCTGAAGG AAATGCTGCA CAAGCTGCTG
CCGTCGGAAA AAGACATAAT GGTCATGACG GTAGGTGAAT CCATAACTCT GGCAGGCACG
GTAAGCAGCC CCGCGCATAT TGCCACAGCC ATGGACATGG CCCGTATGTA CGCCCCCGAC
AAAGTGACCA ACCTCATGAA AGTCGGCGGA ATGCATCAGA TAATGCTTGA AGTGAAAGTC
GCTGAAATGC GCCGCTCCGT CATGCAGCGT CTGGGCATTG ATCTGGCTGC CGCGTGGGGC
AACAGTTTTG CCTTTACCAT GCTCAACCAG CTGTTCACAC TTGACAATCA GGACGGAACC
ATAGGTGTGG GCCGCACCGC CGCTGTGCTG AGCCCTAACA ATACCGGCGT GTTTCAGGCA
CCGGTAGGCG GCATGACACT GACCGGCTTT CTGGATGTGC TCAAGGAAAA CGGTCTTGTA
AAAGTACTGG CCGAGCCCAC GCTGGTCTGC CGGAGCGGTG AGCATGCCAG TTTTCTTGCC
GGCGGCGAGA TCCCCATACC TGTACCGCAG GGGCTGGGTA CCGTGGCCAT CGAATTCAAG
GAATACGGCG TAACGCTGGA TTTCACGCCC ACGGTACTTT CGCCGCGCCA GATAAGCCTC
AAGGTTGAGC CGGAAGTCTC CGAGCTTGAT TATGCCAACG TCATCCAGAT CAACGGTTTC
TCCATTCCCG GCATCAGCAG CAGGCGGGCC TCCACCACGG TGGAGCTGGG CGACGGTCAG
AGCTTTGCCA TTGCCGGTCT GCTGCGCGAT GAAGTCCGCG AAACCATAAA AAAATACCCC
GGACTGGGCG ACATTCCCGT ACTGGGAACC CTGTTCCGTT CTTCCAGCTG GCAGAAAAAT
GAAACCGAGC TCGTGATCAT CATAACCCCG CGGCTGGCCA AACCGCTGGA TATGACCGCA
CAGACCCTGC CCACAGACGG CTTTCGCGAA CCCACGGAAT ATGAATTTTT CATTCAGGGA
AAAATGGAAG GCGATGCTCC TGCCGCGGCC CCTGCCGCCA TGCGGGGCTC CGGCGATGTT
CAGTCCTCAG ACGGCAATCC GCCGTCCGGC ATGGAAGGCG AGTTCGGCCA CGTGCTCAGA
CTGCGGTAA
|
|---|
| Protein sequence | MTAFNKATTL LVCFRHFPVL AAVLLSAVCA QAAIVPAAVQ LAAGKSVVLE TASPVRRVSV
AAPEVAQVLV LSPTQVYVTG VKPGGTTLTL WNAAGAVSHV FDIQVSPDIA RLKEMLHKLL
PSEKDIMVMT VGESITLAGT VSSPAHIATA MDMARMYAPD KVTNLMKVGG MHQIMLEVKV
AEMRRSVMQR LGIDLAAAWG NSFAFTMLNQ LFTLDNQDGT IGVGRTAAVL SPNNTGVFQA
PVGGMTLTGF LDVLKENGLV KVLAEPTLVC RSGEHASFLA GGEIPIPVPQ GLGTVAIEFK
EYGVTLDFTP TVLSPRQISL KVEPEVSELD YANVIQINGF SIPGISSRRA STTVELGDGQ
SFAIAGLLRD EVRETIKKYP GLGDIPVLGT LFRSSSWQKN ETELVIIITP RLAKPLDMTA
QTLPTDGFRE PTEYEFFIQG KMEGDAPAAA PAAMRGSGDV QSSDGNPPSG MEGEFGHVLR
LR
|
|---|
| |