| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2359 |
|---|
| Symbol | |
|---|
| ID | 3757375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2380500 |
|---|
| End bp | 2381318 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637783255 |
|---|
| Product | putative pilus assembly protein CpaB |
|---|
| Protein accession | YP_388851 |
|---|
| Protein GI | 78357402 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3745] Flp pilus assembly protein CpaB |
|---|
| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.934464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT CATCACTCAT CCAGATTGCT GTAGCGCTGG TGCTGGCACT TGGGGCCGGA
GCACTCGTCT TCCGCATGAT GCAGGCCCCC GCCCGCACGG CACAGCCCCC CAAAGTCGCC
AGCGTCATGC TGGCCGTGGC GGCAGCTGAT ATGACCAAAG GCACAAGAAT ACGTGCCGAA
CAGATCACCA TGGCCGAATT TCTGCTGCAG ACCGCCCCCG CGGGGGCCTT TTCCTCCGCA
GATGAGCTTA CGGGCAGAGT GCTCGCTTCC GCCGTGACAG CCGGCGAACC CATCACTCCC
GCGCGGCTGG TGGAAGACAC CGTCCGTTAC GGCGGCGTCA GCACCATGAT CAGCCCCGGC
AAACGGGCGG TGGCGGTAAA GGGCAACAAT GTTCTGGGTA TGGCCGGATT CATCCGCCCC
GGAAACCATG TGGACGTACT GGTGACCATA GATGACAACA GGCGCCCCCA AGACAAGGCC
GTGACCAAAA CCGTACTGGA GAACATCCGC GTACTGGCCA CCGGCACCGA ACTGGAACAG
CAGGGCGACG ACACCGCCAC ATCACCGGTG GACATCTATA CGCTGGAAAT GCTGCCCCGC
GAGGTGGAAG TGCTCTCTCT GGCTGCTTCC CGCGGAGAGG TACACTTTTC CCTGCGCAAT
CCGGCAGATA CTGATTCCGT CAAAACAGCC GGTACGGACG TCCCCCATGC GCTTTCCATG
CTGCGTCCTG CAGCCGCGCC CGCCAGCAAA GCGCGTGCCG CCGCTTCTGT GGAAGTCATC
AGCGGAACAC AGCGCTCAAC ACTGAGGTTC AGGCAATGA
|
|---|
| Protein sequence | MKKSSLIQIA VALVLALGAG ALVFRMMQAP ARTAQPPKVA SVMLAVAAAD MTKGTRIRAE
QITMAEFLLQ TAPAGAFSSA DELTGRVLAS AVTAGEPITP ARLVEDTVRY GGVSTMISPG
KRAVAVKGNN VLGMAGFIRP GNHVDVLVTI DDNRRPQDKA VTKTVLENIR VLATGTELEQ
QGDDTATSPV DIYTLEMLPR EVEVLSLAAS RGEVHFSLRN PADTDSVKTA GTDVPHALSM
LRPAAAPASK ARAAASVEVI SGTQRSTLRF RQ
|
|---|
| |