Gene Dde_2231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2231 
Symbol 
ID3757242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand- 
Start bp2269114 
End bp2270160 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content54% 
IMG OID637783122 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_388723 
Protein GI78357274 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.000236201 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCATCA AACAAGGCGA CAGGCTTATC AACACGCGTA ACTGGTCCGA GCTGGTCAAG 
CCCGATCAAA TCTCCCGGGC TAGTGAATCC GCCGACACCA TGTACGGCAA GTTCGTCTGC 
GAACCTCTGG AGCGCGGCTA CGGAACGACC ATCGGCAATG CCATGCGTCG CGTCCTGCTG 
GCGTCCCTGC AGGGCGCCGC GTTTGTGGCC GTAAAGATCT CTGGAGTTCA GCACGAGTTC 
ACCACCATTC CCGGTGTGCT TGAAGACGTT ACCGATATCG TACTCAACCT TAAACAGGTC 
CGTCTTGCCA TGGATACCGA GGAGCCTCAG CACCTTGAGC TCCATGTCAA CAAGAGCGGC 
GAAGTTAAGG CCGGCGACAT CAAGTGCAAT CAGCACGTGA TGGTTCTGAA TGCAGATCAG 
CATCTTATGA CGCTGACTGA GGACGTTGAG CTGACCTTCG AACTCGAAGT TCGTATGGGT 
AAGGGCTATG TTCCTGCCGA TATGCACGAA GGGCTGAGCG ACGAGATCGG CCTTATTGCC 
CTTGATGCCA GCTTTTCGCC GGTACGCAAG GTCGCCTACA CGGTGGAGCA GGCTCGCGTT 
GGCCAGATGA CCAACTACGA CAAGCTCATC CTTGAAGTGT GGACCGACGG CTCCATATCC 
CCCGAGGATG CGATTGCGTA CAGTGCCAAG ATCATCAAGG ATCAGATTTC GGTCTTCATC 
AACTTTGACG AGCGTATTTC CGAACAGGAA AACGAAGGCA GAAGCTCTGC TTCTGACGTC 
AATGAAAACC TGTTCAAGGG CATTGACGAG CTCGAACTTT CTGTTCGCGC CACCAACTGC 
CTGAAGTCGG CCAACATTTC GCTGGTCGGC GAGCTGGTGC AGAAGTCCGA AGGTGAAATG 
CTGAAAACCA AGAACTTTGG CCGTAAGTCG CTTGACGAAA TCCGTCGGGT ACTGGGCGAA 
ATGTCTCTCG ATTTCGGCAT GAAGGTCGAT GGCTTCGAGA AGAAATATCA GGAATGGTTG 
AAGAGGAAGC AGCAAAATGA GGCATAG
 
Protein sequence
MLIKQGDRLI NTRNWSELVK PDQISRASES ADTMYGKFVC EPLERGYGTT IGNAMRRVLL 
ASLQGAAFVA VKISGVQHEF TTIPGVLEDV TDIVLNLKQV RLAMDTEEPQ HLELHVNKSG 
EVKAGDIKCN QHVMVLNADQ HLMTLTEDVE LTFELEVRMG KGYVPADMHE GLSDEIGLIA 
LDASFSPVRK VAYTVEQARV GQMTNYDKLI LEVWTDGSIS PEDAIAYSAK IIKDQISVFI 
NFDERISEQE NEGRSSASDV NENLFKGIDE LELSVRATNC LKSANISLVG ELVQKSEGEM 
LKTKNFGRKS LDEIRRVLGE MSLDFGMKVD GFEKKYQEWL KRKQQNEA