Gene Dde_2207 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2207 
SymbolispG 
ID3757217 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand- 
Start bp2247741 
End bp2248820 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content56% 
IMG OID637783097 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_388699 
Protein GI78357250 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATTG CACGCAGAAA ATCGCGCGAA GTAACCATTG GAAACGTGCG TATCGGCGGA 
GATAATCCCG TAGTTGTCCA GAGCATGACC AACACCGATA CGCGTGACGT CGAGCAGACC 
GTGGAACAGA TCAACAGCCT TGCCGAAGCC GGCTGCGAGA TTGTCCGCGT GGCTGTGCTT 
AATGATGATG CTGCATGGGC TATCAGGCCG ATCAAAGATC AGGTCACGGT GCCGTTGGTG 
GCGGACATTC ATTTTGACCA TCGTCTCGCT GTTTCCGCTC TGGAGGCAGG CGTGGACGCC 
CTGCGCATCA ATCCGGGCAA CATCGGCGGT CAGAAAAACG TGGACAAGGT GGTGGATGCT 
GCCAAGGCCC ACGGTTCCGT CATCCGTGTG GGAGTGAACG GCGGTTCGCT GGAGCGCGAT 
CTGGTGGAAA AATACTGCGG TCCCACGCCG GAGGCCATGG TGGAAAGCGC TTTGCGCCAT 
GTGCGGATGC TGGAAGACCG CAATTTTGAC AACATCAAGA TTTCGCTCAA ATCCTCTTCC 
GTAACGGATA CTGTAACGGC CTACCGGCTG CTCGGGCAGC AGTGTGAATA TCCTTTGCAT 
ATCGGCGTGA CAGAAGCGGG CACCATGCTG CGCGGCTCTG TCAAGTCGTC GGTGGGCATA 
GGCATATTGC TGTGGCAGGG CATAGGTGAT ACTTTGCGGG TTTCGCTGAC GGAAGATCCC 
GTGGCCGAAA TGGCTGTGGC ATGGGAAATT CTGCGTTCGC TGGGGCTGCG TTTCCGCGGA 
CCGGAAATCA TATCCTGTCC TACCTGCGGC CGTACCGAAA TTGATCTCAT TTCGCTGGCC 
GGAGAGATTG AACGCAGGCT GCAGAACGAA ACCCAGAGTT TCAAAGTGGC AGTCATGGGC 
TGTGTGGTCA ACGGTCCGGG TGAAGCACGG GAAGCGGATA TCGGTATTGC CGGCGGCCGT 
GACAAGGGTA TCATTTTCCG CCACGGCGAG GTTATCCGGA CCGTGAAAGG CGGTTCCAAC 
CTGCTGGCTG CTTTTAATGA AGAACTGGAT AAATTTTTGG CTGAACGTCA AGGACGGTAA
 
Protein sequence
MTIARRKSRE VTIGNVRIGG DNPVVVQSMT NTDTRDVEQT VEQINSLAEA GCEIVRVAVL 
NDDAAWAIRP IKDQVTVPLV ADIHFDHRLA VSALEAGVDA LRINPGNIGG QKNVDKVVDA 
AKAHGSVIRV GVNGGSLERD LVEKYCGPTP EAMVESALRH VRMLEDRNFD NIKISLKSSS 
VTDTVTAYRL LGQQCEYPLH IGVTEAGTML RGSVKSSVGI GILLWQGIGD TLRVSLTEDP 
VAEMAVAWEI LRSLGLRFRG PEIISCPTCG RTEIDLISLA GEIERRLQNE TQSFKVAVMG 
CVVNGPGEAR EADIGIAGGR DKGIIFRHGE VIRTVKGGSN LLAAFNEELD KFLAERQGR