Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_2130 |
Symbol | rho |
ID | 3757139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 2178283 |
End bp | 2179794 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637783019 |
Product | transcription termination factor Rho |
Protein accession | YP_388622 |
Protein GI | 78357173 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00148034 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTGCACCG ACTCATATTA CGAGTTTCCT TTATCCTGTC CTAACCAGAT ACACCTTGCT TACCATACGG CTCTCCTGAC GGAACGCTGT AGTTCGGGCT TTTACCTGAG CACTGCACAA TGTGCGGCAC TGTATCTGGT GCTTTTCTCA CCTTCAGCCC CCCTGCGTCT TGCAATGGAA CAGCAAGAAA ACACAAAACG AAAATACACT CGCAAGAAGA ACACCGTACA GCATCAACCG CCTGCAAACC CGGACAGTCA TATGTATTTG TCTGAGCTGA AAACAAAAAG CATGGCGGAA CTGATGGAGC TGGCAGACCA GTATAACGTC GAAAATCCGA GTAACCTGCG CAAGCAGGAA CTTATTTTCG CCCTGCTGCA GAACTGTGCT TCACAAAACG GTGCCATCTA CGGTGAAGGC GTTCTGGAAA TTCTGCCCGA CGGATTCGGT TTTTTACGCT CGCCCATGTA CAGCTACATG CCGGGTCCGG ACGACATTTA TGTTTCTCCT TCGCAGATCA GAAGATTTAC CCTACGCAAA GGTGACATAG TTTCCGGACA GATACGGCCT CCGAAAGAGG GAGAGCGATA CTTCGCTCTG CTTAAAGTAA CCGAAATCGG ATGCCAGCCC CCCGAAAAGG CAAAAAATCT TGTCCTTTTC GACAACCTGA CCCCCGTTTA CCCTGACAGA CAGCTTATTA TGGAAAACGG GGACAAAAAC TTCTCAGGCA GGGTCATAGA CCTTATGGCA CCCATCGGGT GCGGGCAACG CGGCCTTATT GTCGCTCCGC CCAGAACAGG TAAAACCGTC CTGCTCCAGA ACCTCGCCAA CTCGATCAAC GCCAACAATC CTGACGTCTA CCTCATTGTC CTGCTTATAG ACGAGCGCCC CGAAGAAGTT ACCGACATGG AGCGCACCGT CAAAAATGCC GAAGTCATCA GCTCCACGTT TGACGAACCG CCCCAGAGGC ATGTTCAGGT GTGTGAAATG GTACTGGAAA AGGCAAAGCG TCTGGTCGAA CGCAAACGTG ACGTCGTGAT TCTTCTTGAT TCCATAACCC GTCTGGGGCG CGCATATAAT GCTGTAACCC CCTCTTCCGG CAGGGTTCTT TCCGGCGGAC TAGACGCCAA CGCCCTGCAG CGTCCCAAGC GGTTTTTCGG TGCTGCGCGC AATATTGAAG AAGGCGGAAG CCTCACTATC ATCGCCACAG CTCTGATCGA CACCGGTTCC CGTATGGACG AAGTGATCTT TGAAGAATTC AAAGGCACAG GCAACCTTGA TATTTATCTT GATCGCCACC TTTCTGAAAA ACGCGTATTC CCGGCCATTG ATATCAACAG AACCGGTACG CGCAAAGAAG ATCTTCTGCT TTCGGATGAA GTGCTCAACA GAGTGTGGAT TCTGCGCAAA ATTCTGGCAC CCATGAACTC TGTCGACAGT ATGGAGTTTT TGCTGGACAA AATGCGGGGT ACCAAAAGCA ATCGGGACTT TCTTATCGGG ATGAATAAAT AA
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Protein sequence | MCTDSYYEFP LSCPNQIHLA YHTALLTERC SSGFYLSTAQ CAALYLVLFS PSAPLRLAME QQENTKRKYT RKKNTVQHQP PANPDSHMYL SELKTKSMAE LMELADQYNV ENPSNLRKQE LIFALLQNCA SQNGAIYGEG VLEILPDGFG FLRSPMYSYM PGPDDIYVSP SQIRRFTLRK GDIVSGQIRP PKEGERYFAL LKVTEIGCQP PEKAKNLVLF DNLTPVYPDR QLIMENGDKN FSGRVIDLMA PIGCGQRGLI VAPPRTGKTV LLQNLANSIN ANNPDVYLIV LLIDERPEEV TDMERTVKNA EVISSTFDEP PQRHVQVCEM VLEKAKRLVE RKRDVVILLD SITRLGRAYN AVTPSSGRVL SGGLDANALQ RPKRFFGAAR NIEEGGSLTI IATALIDTGS RMDEVIFEEF KGTGNLDIYL DRHLSEKRVF PAIDINRTGT RKEDLLLSDE VLNRVWILRK ILAPMNSVDS MEFLLDKMRG TKSNRDFLIG MNK
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