Gene Dde_2130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_2130 
Symbolrho 
ID3757139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp2178283 
End bp2179794 
Gene Length1512 bp 
Protein Length503 aa 
Translation table11 
GC content51% 
IMG OID637783019 
Producttranscription termination factor Rho 
Protein accessionYP_388622 
Protein GI78357173 
COG category[K] Transcription 
COG ID[COG1158] Transcription termination factor 
TIGRFAM ID[TIGR00767] transcription termination factor Rho 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00148034 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGCACCG ACTCATATTA CGAGTTTCCT TTATCCTGTC CTAACCAGAT ACACCTTGCT 
TACCATACGG CTCTCCTGAC GGAACGCTGT AGTTCGGGCT TTTACCTGAG CACTGCACAA
TGTGCGGCAC TGTATCTGGT GCTTTTCTCA CCTTCAGCCC CCCTGCGTCT TGCAATGGAA
CAGCAAGAAA ACACAAAACG AAAATACACT CGCAAGAAGA ACACCGTACA GCATCAACCG
CCTGCAAACC CGGACAGTCA TATGTATTTG TCTGAGCTGA AAACAAAAAG CATGGCGGAA
CTGATGGAGC TGGCAGACCA GTATAACGTC GAAAATCCGA GTAACCTGCG CAAGCAGGAA
CTTATTTTCG CCCTGCTGCA GAACTGTGCT TCACAAAACG GTGCCATCTA CGGTGAAGGC
GTTCTGGAAA TTCTGCCCGA CGGATTCGGT TTTTTACGCT CGCCCATGTA CAGCTACATG
CCGGGTCCGG ACGACATTTA TGTTTCTCCT TCGCAGATCA GAAGATTTAC CCTACGCAAA
GGTGACATAG TTTCCGGACA GATACGGCCT CCGAAAGAGG GAGAGCGATA CTTCGCTCTG
CTTAAAGTAA CCGAAATCGG ATGCCAGCCC CCCGAAAAGG CAAAAAATCT TGTCCTTTTC
GACAACCTGA CCCCCGTTTA CCCTGACAGA CAGCTTATTA TGGAAAACGG GGACAAAAAC
TTCTCAGGCA GGGTCATAGA CCTTATGGCA CCCATCGGGT GCGGGCAACG CGGCCTTATT
GTCGCTCCGC CCAGAACAGG TAAAACCGTC CTGCTCCAGA ACCTCGCCAA CTCGATCAAC
GCCAACAATC CTGACGTCTA CCTCATTGTC CTGCTTATAG ACGAGCGCCC CGAAGAAGTT
ACCGACATGG AGCGCACCGT CAAAAATGCC GAAGTCATCA GCTCCACGTT TGACGAACCG
CCCCAGAGGC ATGTTCAGGT GTGTGAAATG GTACTGGAAA AGGCAAAGCG TCTGGTCGAA
CGCAAACGTG ACGTCGTGAT TCTTCTTGAT TCCATAACCC GTCTGGGGCG CGCATATAAT
GCTGTAACCC CCTCTTCCGG CAGGGTTCTT TCCGGCGGAC TAGACGCCAA CGCCCTGCAG
CGTCCCAAGC GGTTTTTCGG TGCTGCGCGC AATATTGAAG AAGGCGGAAG CCTCACTATC
ATCGCCACAG CTCTGATCGA CACCGGTTCC CGTATGGACG AAGTGATCTT TGAAGAATTC
AAAGGCACAG GCAACCTTGA TATTTATCTT GATCGCCACC TTTCTGAAAA ACGCGTATTC
CCGGCCATTG ATATCAACAG AACCGGTACG CGCAAAGAAG ATCTTCTGCT TTCGGATGAA
GTGCTCAACA GAGTGTGGAT TCTGCGCAAA ATTCTGGCAC CCATGAACTC TGTCGACAGT
ATGGAGTTTT TGCTGGACAA AATGCGGGGT ACCAAAAGCA ATCGGGACTT TCTTATCGGG
ATGAATAAAT AA
 
Protein sequence
MCTDSYYEFP LSCPNQIHLA YHTALLTERC SSGFYLSTAQ CAALYLVLFS PSAPLRLAME 
QQENTKRKYT RKKNTVQHQP PANPDSHMYL SELKTKSMAE LMELADQYNV ENPSNLRKQE
LIFALLQNCA SQNGAIYGEG VLEILPDGFG FLRSPMYSYM PGPDDIYVSP SQIRRFTLRK
GDIVSGQIRP PKEGERYFAL LKVTEIGCQP PEKAKNLVLF DNLTPVYPDR QLIMENGDKN
FSGRVIDLMA PIGCGQRGLI VAPPRTGKTV LLQNLANSIN ANNPDVYLIV LLIDERPEEV
TDMERTVKNA EVISSTFDEP PQRHVQVCEM VLEKAKRLVE RKRDVVILLD SITRLGRAYN
AVTPSSGRVL SGGLDANALQ RPKRFFGAAR NIEEGGSLTI IATALIDTGS RMDEVIFEEF
KGTGNLDIYL DRHLSEKRVF PAIDINRTGT RKEDLLLSDE VLNRVWILRK ILAPMNSVDS
MEFLLDKMRG TKSNRDFLIG MNK