| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2117 |
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| Symbol | |
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| ID | 3757125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | + |
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| Start bp | 2166660 |
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| End bp | 2168360 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637783005 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_388609 |
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| Protein GI | 78357160 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000306715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCCT TCAGGCACAT CACGCTGGCA ACAGCGTTGT GCGCGTCACT CACTGCCGGA
TGCGCCACAG GACGGTACAA CGGCGACACA GCACCGGAAC AGACTCCCGC CGGCTGGCAG
ATGTCTGAAA GTGCACAGCG CACCTATAAT TTTCTGCTGC TTAACGAAGC CGTGCGGGAA
AACGACGATG CCACGGCTTC GGCTGCCATC TCGCGCCTAC TTGAGCTGAA CAATTCGCCC
GAAATATATC TGGCAGCGGC CAATTATTAC CGCCTGCGGG GCGAAGCATC GTTCGCACGC
CCCATCCTGC AGAAAGGCAT TGAGCTGCAC CCCGACAATC TGGATCTGAC ACTGGCGCTT
GTGGAAGCCT ATATGCAGGA AAACAGACCG GATGCCGCTC TGGCCGCTTT GACAGACTTT
GTGCACAGGC ACAAGGATGA CTACGAAGCG CAACAGATAC TTGCCATATA TCTTCTGGAT
GCAAAGGAAT ACGCACAGGC TGCCGACATG CTGGAAGCGG TCCCCGAAGA CAGACGCAGC
GCGCATTCCT ATTACTATCT TGCCAAGGCG CATATAGGCC TGAGCAAATT TGAAGAGGCC
GAAGAGGCCC TGCACACGGC GCTTAAAATG GAACCGGATT CAGCCGTCGA AGCATGGGCG
GAGCTGGCAT ATCTTTATGA ACTGCAGAAA GATTACCCCG CAGCGGAACA GACGTATGCC
CGCATTCTGG AGCTTGGTGA CGCCGGCCCC GAAGTATGGC TGCGTCTTGT GGATCTGAAC
CTCAAGCTTA ACCACCCGCA GAAGGCGCTT GAATACACCC GTCAGGGCCC TGACAGCCTG
GCCTTCACCC TGCAGGCCGG AACACTCTTT CTGGAGGAAG GCTTTTACGA AGAGGCAGAA
GAAATTCTGC TGCCCGTGAG CAACCGCCCT GACAGCCCCG AAGAAATCTG GTTTTATCTG
GGAGTGCTTT CGCTGCGCGG TCACGATGAT GCCGACGCGG CCATCGCCAA CTTTGCCAGA
GTGCCTGTTT CAAACAGATA CTACAGTCAG GCCCTGCGGT TCCGCGCCGA CCTGCTGATA
GAACAGGGCG ATTACCCTGC GGCACAGCAG CTTATCGACG AAGGGAAACG ACGTTTTCCC
GACTCGCCGG AATTCTGGCT GATAGAGGCC GGAGCGGCAT TTGAACGTGA AGACTTTACC
AGTGCGGAAC GCATCCTGCG TGAAGCGCTG GGGAACTGGC CCGGAGACCC GCAGTTTCTT
TTTGCGCTGG GCAGCCTGTA CGACACCCGC GGAGAAAAGC AGAAAGCGCT TGAATTTATG
GAACAGGTCA TTCTGGCCGA CACCGACCAT TACCGCGCGC TTAATTATGT GGGCTACACG
CTGGCAGAAC AGGGACGCGA TCTGGACAGG GCGCTCGTGC TCATCGAAAG CGCGCTCAAA
CTGAGCCCCG GCAGCGCCTA CATACTCGAC TCACTGGCAT GGGTACATTA CAAACTCGGC
AACAACGCGC TGGCGCTCAA AAATATCCGT CTTGCCGTTG CCGCCGAAGG CGGCGACGAC
CCGACCATGT GGGAACATTA CGGAGACATC GCCGCTCGTG CCGGTCAGCG CAAACTTGCA
CTGGAAGCCT ATCGCAAGGC CATCAGGCTG GGCTCTCCCC AAGCTGATGC CATCAGAAAC
AAAATCAACG GGCTGCAATG A
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| Protein sequence | MFSFRHITLA TALCASLTAG CATGRYNGDT APEQTPAGWQ MSESAQRTYN FLLLNEAVRE
NDDATASAAI SRLLELNNSP EIYLAAANYY RLRGEASFAR PILQKGIELH PDNLDLTLAL
VEAYMQENRP DAALAALTDF VHRHKDDYEA QQILAIYLLD AKEYAQAADM LEAVPEDRRS
AHSYYYLAKA HIGLSKFEEA EEALHTALKM EPDSAVEAWA ELAYLYELQK DYPAAEQTYA
RILELGDAGP EVWLRLVDLN LKLNHPQKAL EYTRQGPDSL AFTLQAGTLF LEEGFYEEAE
EILLPVSNRP DSPEEIWFYL GVLSLRGHDD ADAAIANFAR VPVSNRYYSQ ALRFRADLLI
EQGDYPAAQQ LIDEGKRRFP DSPEFWLIEA GAAFEREDFT SAERILREAL GNWPGDPQFL
FALGSLYDTR GEKQKALEFM EQVILADTDH YRALNYVGYT LAEQGRDLDR ALVLIESALK
LSPGSAYILD SLAWVHYKLG NNALALKNIR LAVAAEGGDD PTMWEHYGDI AARAGQRKLA
LEAYRKAIRL GSPQADAIRN KINGLQ
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