| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2052 |
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| Symbol | |
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| ID | 3757060 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 2094872 |
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| End bp | 2096641 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637782940 |
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| Product | sigma-70 factor |
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| Protein accession | YP_388544 |
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| Protein GI | 78357095 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0289381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAACA TTAAGGAAAT CCAGCAAATC AAGACCCTGA TTGCCAAAGG CAAGGTCGCG
GGCTTTCTCA CGTTTGAGGA AGTTAACAAA GCTTTGCCGG CAGAGGTCAA CACGCCTGAG
CAGATTGAAG AAATCATCGG GATTTTCGAT CAGCTTGATA TTGCGATTGT CGATTCTGAA
AAAGACGGCA AAAAAATAAG CGTTTCCCCT GCCGAGGCAG ATGACGAAGG GGGTGACGGA
GGGCTGGAGC TGACCGATGA AGACGATCCT GCCGACTATT CTTCGCGCAG TACAGACCCT
GTAAGGATGT ACCTGCGGGA AATGGGCGCT GTGCCGTTGC TCGACCGTGA CGGTGAAGTG
AACATTGCCA AGAAGATAGA GACCGGAGAG CAGGATGTTC TGTACGCTCT GGTGGAAGTT
CCCATCGCTG TGGAAGAGCT TATTTCCGTG GGCGAAGACC TGAAGGAAAA CCGCATCAAA
CTTAAGGATG TGGTTAAAAC CATCGAGGAA GACGACCCCA GCGAAGACGA GATGAACCAG
CGGCAGCGGG TTATTTTGCT GCTGGATGAA ATCCAGTCTA CATTCAAGAA AAAACGCAAG
GTTTATCAGC GTCTTGACGA GTGCTGTACG CTTGAGCGCC GCGTATATGG TATCCAGAAG
GAAATTATCG CCTATAAAGA GGAGATAGTC TCCCGACTGC GCGACATCAA GCTGGAAAAA
ACGCTTATCG ACCGTATTAT AGAAACGGTT GAAGACTATG TGCGTCAGAT GCATAACTGC
CAGCGGGACC TTTCGGCATA TATATTGTCC ACCGGCAAGA CCCAGACGGA AATGCGCGAG
CTGTTCCGTC AGCTGGACGA CCGCGAAATC AATCCGGTTG TGGCGGCAGA CAGCCTTAAT
CTGACGGTTG AAGAGCTGTT TTCATTCAAG GAAATGATCA TGGGCAAAAT GGAAATCCTG
AACAGGCTTC AGGAGAAATG CTGCCACAAC GTGACTGACC TTGAAGAAGT GCTCTGGCGT
ATCAAGCGCG GAAACAGTCA TGCCATGCGT GCCAAGCAGG AACTTATCCG TTCCAACCTG
CGCCTTGTGG TGAGCATCGC CAAAAAATAC ACCAACCGCG GTTTGCAGTT TCTTGACCTG
ATTCAGGAAG GGAACATCGG CCTGATGAAA GCTGTGGACA AGTTCGAGTA TCAGCGCGGG
TACAAGTTTT CGACCTACGC CACGTGGTGG ATCCGTCAGG CCATCACGCG CGCCATTGCA
GATCAGGCGC GGACAATCCG TATTCCTGTG CATATGATCG AAACCATCAA CAAGCTGATC
CGTACATCGC GTTATCTTGT TCAGGAACTC GGGCGTGACC CCACACCTGA AGAAATCGCC
GAACGTATGG ATTACCCCAT CGACAAGGTG AAAAAGGTTC TGAAAATTGC CAAGGAACCC
ATCTCCCTTG AAACGCCTAT CGGCGATGAA GAAGATTCGA GCCTCGGTGA TTTTATTGAA
GACAAGAAAG CCGTTGCTCC TGCCGAAGAA GTGGTCAACA CCAAGCTGAG CGAGCAGATT
GCCGCAGTGC TGGCTGATCT GACTCCCCGC GAAGAGCAGG TGCTGCGTAA GCGCTTCGGC
ATCAACGAGA AGTCCGATCA CACTCTTGAG GAGGTCGGAA AGCTGTTTAA CGTGACACGA
GAGCGCATCA GGCAGATAGA AGCCAAGGCG CTGCGCAAGC TCAGGCATCC GGTAAGGAGC
CAGACCCTGC GCTCGTACTA CGAAAGCTAG
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| Protein sequence | MGNIKEIQQI KTLIAKGKVA GFLTFEEVNK ALPAEVNTPE QIEEIIGIFD QLDIAIVDSE
KDGKKISVSP AEADDEGGDG GLELTDEDDP ADYSSRSTDP VRMYLREMGA VPLLDRDGEV
NIAKKIETGE QDVLYALVEV PIAVEELISV GEDLKENRIK LKDVVKTIEE DDPSEDEMNQ
RQRVILLLDE IQSTFKKKRK VYQRLDECCT LERRVYGIQK EIIAYKEEIV SRLRDIKLEK
TLIDRIIETV EDYVRQMHNC QRDLSAYILS TGKTQTEMRE LFRQLDDREI NPVVAADSLN
LTVEELFSFK EMIMGKMEIL NRLQEKCCHN VTDLEEVLWR IKRGNSHAMR AKQELIRSNL
RLVVSIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYQRG YKFSTYATWW IRQAITRAIA
DQARTIRIPV HMIETINKLI RTSRYLVQEL GRDPTPEEIA ERMDYPIDKV KKVLKIAKEP
ISLETPIGDE EDSSLGDFIE DKKAVAPAEE VVNTKLSEQI AAVLADLTPR EEQVLRKRFG
INEKSDHTLE EVGKLFNVTR ERIRQIEAKA LRKLRHPVRS QTLRSYYES
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