| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2039 |
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| Symbol | |
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| ID | 3757047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 2080135 |
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| End bp | 2083593 |
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| Gene Length | 3459 bp |
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| Protein Length | 1152 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637782927 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_388531 |
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| Protein GI | 78357082 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.583772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGTTTG AAGAAATAGC GAAAAGGCTG GGCGGCGGTG CGGCGCACAG CCTGCATGTG
GCCCGCAGCG GCCCTGCGAC CCGTGCCAGA CTGGCAAAGG AACTGATTGA TCAGGGCCGG
AGTGTTGTGC TGGTTGCCCG CAATGCTGAT GAGCTGGCAG AGCTCAGGGC GCTGGCAACG
CTCTTTTCGC CGGACGAATC GTCGGAGGAC GTGAGTCTGA CGGTACCCGC GTGGGAGCGT
CGCTGGATTA TTATTCCCCA GCATCCGGCG GGCAGCCCAG GGCGTACTGC GTGGGCAGCA
CGCATGGCCA GCCTGTATGC GCTCAACAGG CGGCACATGC CGCAGGCGGT CATAGTATCG
CTTGATAATT TCATTCCCAA GCTTCCTCCT CCTTCCCTTT TTGATAAGCA TCAGCTGGTT
CTTTCGACCG GCGAGGACAT GTCCCCCGGG CTGGTCATGG AACAGGCTGT GGAGTGGGGA
TACACGCGCA CCGCATATGT CACCCAGCCC GGAGAAATAG CGTTGCGCGG GGATATTCTG
GATATTTTTC CGCCGGGCTA TGCCAAACCG GTACGGCTGG ACTTTTTCGG CGACACTCTG
GAAGAAATCC GTCTTTTTGA TCCTTCAAGC CAGAGATCAA AAGGCAATCT TGCGGAAGTG
ACTCTTATTC CCACTGCGCC GGTGGTGCTG GAAGGCGCAC CCCGTGCCGA GGCCCGCAGC
TTCTGGCAGC GGGCTGCCGA GTCCGGCCTG CTGCCGGACG GTGCGCCTGC AGCGCTTGAT
GTGGCCGCAG GAGAGGCCCG TGCAACGCTA CTGCCGGGGG TATACTATCA GGATGCCGTT
TTTCTGGAGC GCTGGCTGCC GCCCGATGCG GTCTATATTC TGCCTGCTGA AAGGGATGTG
GCCGAAGCAC TCAAGCAGTC TGCCAGAACA TGGGACGATT TTTCCGACCA GCAGGAGCGG
GAGTACGGCA TTCATCAGCC TGCGGCCATG ACCATCCGTG AGGCGGAAGA CGTCACCGCT
TTGTTCGGGC AGACAGTGCG TGTGTACTTT GAAGAACTGG TCATGGGAGT GGAGCAGAAG
GGAGAAAACC TGCCGGAACG TGGGTATGAG GTCTTTCAGG ATCTTTTTTA CGAAAAAGAG
CAGAGCGACC GGCCGTGGCA GACACTTATT GAAGCTCTCA AGGAATGGAG CCGCACCAGA
CGCCAGACTG TTCTGAGTTT CGGTTCGGCG CGCAGCAGGG CCAAATTTCT TTCACTGGCC
CAGCAGGACG GCATCAGTCC GTATCTGCGG TATGACAAAA GCACCGCTGG TGTTTTTGCT
CTTGTGTCGG CTTTCCGCAA GGGGGCTGAA CTGCAGTGGG ATAACTCGGT TGTGCTGGGC
GAAGATGTGC TGCAGCCGCG TACACGGCAG CAGAGGGTGC GGTCCGGCGC TTTTGCGGGG
TTGAAATCCT ACGACGACCT TGAGGCGGGG GCCATGCTGG TTCACCGCGA TTACGGCGTC
GCCCGTTTCG AGGGCTTGCT GCGAATGGAT CTGGGGGGCG TCTCAAACGA TTACCTTCTG
CTCCGTTATG CCGGTGATGA CAAGCTGTAC CTGCCTGTGG ACAGACTTTC TCTGGTTCAG
CGGTTCAAAG GGCCTGACGG TACGGCACCT TCGCTGGACA AGCTGGGCGG TGCCGGCTGG
AGCGCCAGCA AGTCCAAAGC CCGTAAAGCC ATCGAGAGGA TCGCGCATGA TCTGGTGGAG
ATGTATGCGT GGCGCAAGGT TGCAAAAGGA TACCGTTATT CTCCCGTAAA CGACATGTAC
CGCGAGTTCG AGGCATCGTT CGGGTTTGAG GAGACTCCTG ATCAGGCGCG GGCCATCGAG
GACGTTCTTG ATGATATGGA ACGTGCTGAA CCCATGGACA GACTTGTATG CGGCGATGTG
GGCTTCGGCA AGACGGAGGT CGCACTGCGG GCGGCATTCC GCGCCGCCAT GGACGGAAAA
CAGGTGGCTC TGCTGTGCCC CACCACCGTG CTGGCGGAAC AGCATTTCCA GACATTCCGG
AGCCGCCTCG GGCAGTTTCC CGTCAATGTG GGTATGCTCA GCCGGTTTGT TTCACGTCAG
CGTCAGAAGG AAGTGCTGGC CGCGTGTGAA CGCGGGCAGA TTGACATTCT GATCGGTACG
CACAGGATTT TGTCTGATGA TGTCATCCTG CCGAATCTGA GCCTGCTTAT CCTGGATGAA
GAACAGCGGT TCGGCGTGCG GCATAAGGAA CGCCTGAAGA AAATGCGCAG GAACGTGGAT
GTGCTTACCC TGACTGCAAC CCCTATTCCG CGGACTCTGC AGCTGTCCAT GTCGGGCATC
CGTGAGCTGA GCGTCATTGA AACGGCGCCG CCGGAGCGCA AGCCCGTAAA GACCGCTCTC
ATAGACAGGG ACCCTGATAT TCTGCGCGAG GTCCTGCTGC GCGAACTGCA GCGCGAGGGG
CAGGTTTTCT GGGTGCACAA CAGGGTGCAG GGACTTGAGC GTGTGGCCGA GTATGTCCGG
TCGCTTGTTC CTGACGCCCG CGTGGGTATG GCCCACGGCC AGATGTCGGA AAAGGCGCTG
GAAGAAACCA TGCACAAGTT CTGGCATGCG GAACTGGACG TTCTTGTCTG TACCGCCATT
GTGGAATCGG GGCTGGATTT TCCCCGTGCC AACACGCTTG TGGTGGATCA GGCGCAGATG
TTCGGTCTGG GGCAGCTGTA TCAGTTGCGC GGCAGGGTGG GCCGCTCCGA CCGGCAGGCT
CATGCTGTCT TTGTTGTGCC GGATGTGGAC GGTGTGCCGG AACTTGCACG CAAGCGTTTG
AAAATAATAC TTGAAATGGA TTATCTGGGG GCCGGTTTTC AGGTCGCCAT GGAAGACCTG
CGTCTGCGTG GGGCCGGTAA TATTCTTGGC GAGGTGCAGT CCGGACACAT GGTCAAGATC
GGTCTGGACA TGTACCTTGA AATGCTTGAA GAAGAAGTGG CCCGCCTGAA GGGTGAGCCG
GTGCGCGAAG ATGTGCAGAC CGAGCTTAAC ATAGGCATTA CGGCTCATAT TCCCGAAGGC
TATATGGACG ATGGAAGAGA GCGTCTGAAG TATTACAAGG CTCTTTCTTC GGCAGCGGAC
GGTGCTGCGC AGGAAAGCAT CGAGCTGGAA ATGCGGGACA GGTTCGGTCA TTTTCCGCAG
GAGCTTCAGG CTTTTCTGGG AATACTGCGC CTCAAGCGTT ATCTGGGTAC TCTTGATGTG
CAGAAGGCTG ATATTTTTGC GGATAAGGTG AGGCTGACCT GGGCGGAAAA CGCCGGAGCG
GTTTCTCCTG CCACACTGGT GGGCTGGGTT GCAGAAAGGG CAGGCAGGGC ACGTCTGGTG
CCGCCTGCCA TCATGGAAAT CCAGCTGCCG GAAGGTTCCG CTTTTGAAGA CCGGCTTTCT
GCCCTGCAGT CGGAACTTGA ATTGCTGCGG GCACAGTAG
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| Protein sequence | MQFEEIAKRL GGGAAHSLHV ARSGPATRAR LAKELIDQGR SVVLVARNAD ELAELRALAT
LFSPDESSED VSLTVPAWER RWIIIPQHPA GSPGRTAWAA RMASLYALNR RHMPQAVIVS
LDNFIPKLPP PSLFDKHQLV LSTGEDMSPG LVMEQAVEWG YTRTAYVTQP GEIALRGDIL
DIFPPGYAKP VRLDFFGDTL EEIRLFDPSS QRSKGNLAEV TLIPTAPVVL EGAPRAEARS
FWQRAAESGL LPDGAPAALD VAAGEARATL LPGVYYQDAV FLERWLPPDA VYILPAERDV
AEALKQSART WDDFSDQQER EYGIHQPAAM TIREAEDVTA LFGQTVRVYF EELVMGVEQK
GENLPERGYE VFQDLFYEKE QSDRPWQTLI EALKEWSRTR RQTVLSFGSA RSRAKFLSLA
QQDGISPYLR YDKSTAGVFA LVSAFRKGAE LQWDNSVVLG EDVLQPRTRQ QRVRSGAFAG
LKSYDDLEAG AMLVHRDYGV ARFEGLLRMD LGGVSNDYLL LRYAGDDKLY LPVDRLSLVQ
RFKGPDGTAP SLDKLGGAGW SASKSKARKA IERIAHDLVE MYAWRKVAKG YRYSPVNDMY
REFEASFGFE ETPDQARAIE DVLDDMERAE PMDRLVCGDV GFGKTEVALR AAFRAAMDGK
QVALLCPTTV LAEQHFQTFR SRLGQFPVNV GMLSRFVSRQ RQKEVLAACE RGQIDILIGT
HRILSDDVIL PNLSLLILDE EQRFGVRHKE RLKKMRRNVD VLTLTATPIP RTLQLSMSGI
RELSVIETAP PERKPVKTAL IDRDPDILRE VLLRELQREG QVFWVHNRVQ GLERVAEYVR
SLVPDARVGM AHGQMSEKAL EETMHKFWHA ELDVLVCTAI VESGLDFPRA NTLVVDQAQM
FGLGQLYQLR GRVGRSDRQA HAVFVVPDVD GVPELARKRL KIILEMDYLG AGFQVAMEDL
RLRGAGNILG EVQSGHMVKI GLDMYLEMLE EEVARLKGEP VREDVQTELN IGITAHIPEG
YMDDGRERLK YYKALSSAAD GAAQESIELE MRDRFGHFPQ ELQAFLGILR LKRYLGTLDV
QKADIFADKV RLTWAENAGA VSPATLVGWV AERAGRARLV PPAIMEIQLP EGSAFEDRLS
ALQSELELLR AQ
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