| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_2011 |
|---|
| Symbol | rpsA |
|---|
| ID | 3757019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 2052073 |
|---|
| End bp | 2053521 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637782899 |
|---|
| Product | 30S ribosomal protein S1 |
|---|
| Protein accession | YP_388503 |
|---|
| Protein GI | 78357054 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGACG ATCAGAACCA GACAGGCAGT GACAGCTTCG CTGACCTTCT TGACCAGTAC
TCCCCTGAAG CCGGATCCCC CCTTAGGGTA GGAGAAAAAG TAAAAGGCTC CGTTGTGGCC
ATGGATGAAA GCAGTGTGTT CATCGCCACC GGATCCAAGG TTGACGGCGT GATAGATGCG
GAGGAACTGA AAGACAAAGA AGGCAATGTC ACCTGCGCGG TGGGAGATGA ACTCGACCTG
TATGTAGTGG CAATCACACA GGGCGAAGTA CGCCTTTCCC GCTCTGCGGG CAGTGCAGGC
AGCGCCATGG CACTTACAGA GGCATTTGAA AACGGCGTGC CTGTGGAAGG CAAAGTCACC
GCCCAGTGCA AAGGCGGATT CAATGTCGAG GTGATGCAGC GCAGGGCCTT CTGTCCGGTT
AGCCAGATCG ACAGCCGCTT TGTGGAAAAT CCTGAAGAAT ACCTCGGTCA GACTTTCCAG
TTCATGATCA CCCGCTGCGA AAACAACGGC CGCAACGTTG TTGTCTCGCG TCGCGTACTG
CTTGAGGCTC AGCAGGAAGA AAGCCGCAAA GAGTACATGA AGACACTGAA TGAAGGGGAT
GTCGTTGATG TATGCATCAC CCGTCTGACC AACTTCGGTG CATTTGCCGA ACTGGCTCCC
GGAGTCGAAG GACTCATTCA TATTTCCGAA CTCGGCTGGG CCCGTGTCCA GAGTGCGGAC
GAAGCCGTCA CCCAAGGTGA TACACTGCGC GCCAAGGTGC TTAAAATCGA AAGCACCGCC
AAAGGACTGC GCATTGCTCT TTCTGCAAAG CAGGTGATGG AAGACCCTTG GAACACCGTA
GCAGACAGAC TTGCCGCAGG AACCGTGGTG GAAGGCAAAG TTGTGCGCTG CACCCCCTTC
GGGGCTTTTG TCGAGGTGCT TCCCGGTATT GAGGGTCTCG TGCACATCAG CGAAATGTCG
TGGACCAGGC GCATTCTCAA AGCCGAGGAC GTGGTCATTC CCGGAGACAC AGTTTCCGTA
AAAATCAAAG ATATCGACAG CGCCAAACGG CGGATAAGCC TGAGCCTGAG AGAAGCCGAA
GGTGACCCGT GGGACGGCGC CGCCGAAAAG TTCGCCCCCG GAACCGAAGT AACCGGTACG
GTTGAAAAAT GCGCTAAATT CGGGATGTTT GTTAACATCG CTCCGGGGAT AACCGGACTG
TTGCCTCAGT CCCGCATCAG TGCAGCTCCC AAGTCCGGTC TGGCAGGGTG CAAACCCGGT
GACACCGTCA CTCTGGCGGT CATGGAAATC AATCCTGCGG AACGCAAAGT GACCCTGACC
ACCAAGGACG CTGCCCGCCA GGAAGATGCA GAAATACCTG CAAGCTACCG CGTGCAGCCC
AAGTCGTCGC AGGGCGGCGG ATTCGGCACA CTGGGGCAGG CGCTTAAAGA CGCACTTAAC
AAAAAGTAG
|
|---|
| Protein sequence | MTDDQNQTGS DSFADLLDQY SPEAGSPLRV GEKVKGSVVA MDESSVFIAT GSKVDGVIDA
EELKDKEGNV TCAVGDELDL YVVAITQGEV RLSRSAGSAG SAMALTEAFE NGVPVEGKVT
AQCKGGFNVE VMQRRAFCPV SQIDSRFVEN PEEYLGQTFQ FMITRCENNG RNVVVSRRVL
LEAQQEESRK EYMKTLNEGD VVDVCITRLT NFGAFAELAP GVEGLIHISE LGWARVQSAD
EAVTQGDTLR AKVLKIESTA KGLRIALSAK QVMEDPWNTV ADRLAAGTVV EGKVVRCTPF
GAFVEVLPGI EGLVHISEMS WTRRILKAED VVIPGDTVSV KIKDIDSAKR RISLSLREAE
GDPWDGAAEK FAPGTEVTGT VEKCAKFGMF VNIAPGITGL LPQSRISAAP KSGLAGCKPG
DTVTLAVMEI NPAERKVTLT TKDAARQEDA EIPASYRVQP KSSQGGGFGT LGQALKDALN
KK
|
|---|
| |