Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_1818 |
Symbol | secD |
ID | 3756821 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 1868267 |
End bp | 1869859 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637782702 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_388310 |
Protein GI | 78356861 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00022831 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGAGG GCCTGCGATG GAGAATCGCG CTCACACTCG TTGTGGCAGT GATGGGGCTG GCCTATACAC TGCCTAGCAT TCCCGCCTTC AAATCCTCCC CGTTGCAGAA AATCCTGCCC GACAACAAAG TCAGCCTCGG CCTTGACCTT ATGGGCGGTA TTCATCTGAC ACTGGGTGTA GATGTGGACA AAGCGCTGGA AAACGCATTG TCCCAGACGG GAAATGATCT GCGTGAGATC GCGCGTGACG AAGGAATTTT TCTTATGCGG CCCCGCGTGG TCGCAGGAGA CCGGCTGGAG TTCATTCTGC TGAAAAAAGA GCAGCGGGGT GAACTGGATA GCCTGCTGAA AAAACAGTTC GAAAGACTTA CTGTTTCGCC CCCTCAGGTG CTGAACGACG GCAGGGTGAA ATATTCTCTG GCCTTCAGCT CTGAGTACAA AAAGTATCTT TCTAATCTGG CACTTGATCA GGCCGTTAAA ACCATCCGCA ACCGTATTGA CCAGTTCGGC GTGGCCGAAC CCGACATACG CAAGCAGCAG GACAACCGCA TTCAGGTGCA GCTGCCCGGC CTTAACGATC CGGAAAGGGC CATCCAGATC ATCGGCAAAA CCGCCCACCT TGAGTTCAAG ATGGTGCGCG ACGATGTGGA TCCCGCCAAT GTGGCCAGAG GCATTGTTCC GCCCGGAACT GAAATCCGCG AGATGCAGGA ACGGGGCGCC TCGGGTGCCT CGATACCCGT TGTAGTCAAC CGCGAAGCGG TAATGACCGG CGAAAATATT GTGGACGCCC GCGCCAGCTT CGACCAGTTC AACCAGCCCT ACGTCATCAT GACCTTCAAC GACCGCGGGG CACGGATGTT TGAACTGGTG ACCGGTGAAA ACAAAGGTAA GCGGATGGCC ATTGTGCTGG ACGGCAAAGT GTACTCCGCG CCTGTTATTC AGGAAAAAAT CAGAGGCGGG CGGGCCAGCA TCACAGGCCG CTTCAGCGAT GCCGAAGCAC ACGACCTTGC GCTTGTGCTG CGTGCCGGCG CATTGCCCGC ACCGGTGCAT ATTCTTGAAG AACGGTCTGT CGGCCCTTCG CTGGGCCAGC AGTCCATTGA CCAGGGTGTC ACCGCGGCTC TGGCCGGCGG TGTGCTGGTG GTCATATTCA TGGTTGTCTA CTACGGTTTC GCCGGTCTGG TTGCCAACGT GGCACTCAGT TTCACTCTGG TGCTCATCCT TGCCGGCCTT GCCGGATTCG GGGCAACCCT GACGCTGCCG GGCATTGCCG GCATCATCCT GACACTGGGG ATGGCCGTAG ACGCCAACGT ACTGATCTTC GAACGAATCC GGGAAGAACT GCGTAAGGGG CTAACCCCCC GGGCAGCCAT TCAGGAAGGG TACAGCAGGG CCACTCTGAC CATTGTGGAT GCCAACATCA CCACCATCAT AGCGGCTGTC ATTCTGTATC AGTTCGGAAC CGGCCCGATA CGCGGTTTTG CCGTCACGCT GAGTCTCGGC ATTCTGGCCT CCATGTTCAC CGCTATCTTT GTATCGCGCG TGCTTATGGA TATCTGGAGC CTGAAACGCC AGGGCCGAAA GCTCAGCATC TAA
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Protein sequence | MKEGLRWRIA LTLVVAVMGL AYTLPSIPAF KSSPLQKILP DNKVSLGLDL MGGIHLTLGV DVDKALENAL SQTGNDLREI ARDEGIFLMR PRVVAGDRLE FILLKKEQRG ELDSLLKKQF ERLTVSPPQV LNDGRVKYSL AFSSEYKKYL SNLALDQAVK TIRNRIDQFG VAEPDIRKQQ DNRIQVQLPG LNDPERAIQI IGKTAHLEFK MVRDDVDPAN VARGIVPPGT EIREMQERGA SGASIPVVVN REAVMTGENI VDARASFDQF NQPYVIMTFN DRGARMFELV TGENKGKRMA IVLDGKVYSA PVIQEKIRGG RASITGRFSD AEAHDLALVL RAGALPAPVH ILEERSVGPS LGQQSIDQGV TAALAGGVLV VIFMVVYYGF AGLVANVALS FTLVLILAGL AGFGATLTLP GIAGIILTLG MAVDANVLIF ERIREELRKG LTPRAAIQEG YSRATLTIVD ANITTIIAAV ILYQFGTGPI RGFAVTLSLG ILASMFTAIF VSRVLMDIWS LKRQGRKLSI
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