| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1771 |
|---|
| Symbol | |
|---|
| ID | 3756771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 1825203 |
|---|
| End bp | 1826627 |
|---|
| Gene Length | 1425 bp |
|---|
| Protein Length | 474 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637782652 |
|---|
| Product | sigma-54 factor |
|---|
| Protein accession | YP_388263 |
|---|
| Protein GI | 78356814 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0786495 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTAG AGTTACGACA GCAGCTTAAA CTCGCTCAGC AGCTTGTGAT GACGCCCCAG
CTTCAGCAGG CGATCAAACT GTTGCAGCTT TCACGCGTCG AGCTCGTTGA AACCGTTCAG
CAGGAACTGC TGGAAAACCC GTTTCTTGAA GAAACACAGG AAGAGCGCCC AGTCTCTCAG
GCAGAAGAGA GAGCCCCGAG AGCAGAAGAA GCCGACCCTT TCCGTCAGGA ATTGGTAAAG
AATGCCGACT GGGAAAACTA TCTTGGCGAT TTTGCCAGTA CCGGCAAACA GGCAGGCGGA
CGCGACGCGG AAGTGCCGGA AGAGATGACC GCCTTTGAGG CTCGTTTTTC ATCCAGCCCC
ACGCTGGAAG GGCATCTCAG CTGGCAGCTG CGCTTGTCTT CCGCCACGGA AAAACAGCTG
GACATAGCAG AGGTCATAAT CGGCAACCTT TCGCCTGCGG GCTATCTGCA GGCGACGGTG
GAAAACGTGG CGGAAATGGC CGGTGCCGGT ACGGCAGAGG TGGAAGAAAC GCTGCACCTG
CTGCAGCGGC TTGATCCCGT GGGCATAGCG GCGCGTACTC CGCAGGAATG CCTTCTGGTT
CAGGTCGAAG TGCTTGGATA CGACCGCGAC CCTGTGCTTG TCGAGCTGAT CCGCGATCAT
CTGGAAGATC TGGAAAAACG ACGGTACAAG CCTCTTCTCA GAAAATATCG TCTGGGAATG
GACGACCTTA AAGAATATCT TGACCTTATC CAGACTCTTG ACCCCATGCC GGGCTCCCGT
TTCGGTAACG AACAGCCCGC GTATGTCAGC CCCGATGTCT ACGTGTATAA AAGCGAGGAT
GATTTTATCA TCCTGCTGAA CGAAGACGGC CTGCCACATC TCCAGCTGAG TGAATTTTAT
AAAGAAGGCG TCAAGGGCAC CACTGATAAA GAAAAGGACT ACGTGCAGGA AAAAATGCGC
TCCGCCTCGT GGCTTATAAA AAGCCTTTAT CAAAGGCAGC GAACCCTGTA CAAAGTAGTT
GAGAGCATTA TTAAATATCA GAGGGGTTTT TTCGAGGAAG GCGTATCCCG GCTTCGCCCG
CTTATTCTCA AGGATATAGC GGACGACATA GGAATGCACG AATCAACCGT CAGCCGTATT
ACAACAAACA AGTATGTGGC TACCCCCCAT GGTATTGTGG AGCTTAAGTA TTTCTTTAAC
AGTGCACTGG CGTTAAATGA CGGAACAGAG GTAGGTTCTG AAAGTGTGAA AGCGCTGATA
AAGAACCTGA TTTCTGAAGA AAATCCTAAA GAACCGCTCA GTGACGAAAA GATCGGAGAA
ATTCTTAAAG AAAAGTTGCA AGTCAATATT GCTCGAAGAA CCGTGGCGAA GTATCGTACA
GCTATGGGAA TCCCTTCTTC TTCGAAACGA AAAGCTGTAT TTTAG
|
|---|
| Protein sequence | MALELRQQLK LAQQLVMTPQ LQQAIKLLQL SRVELVETVQ QELLENPFLE ETQEERPVSQ
AEERAPRAEE ADPFRQELVK NADWENYLGD FASTGKQAGG RDAEVPEEMT AFEARFSSSP
TLEGHLSWQL RLSSATEKQL DIAEVIIGNL SPAGYLQATV ENVAEMAGAG TAEVEETLHL
LQRLDPVGIA ARTPQECLLV QVEVLGYDRD PVLVELIRDH LEDLEKRRYK PLLRKYRLGM
DDLKEYLDLI QTLDPMPGSR FGNEQPAYVS PDVYVYKSED DFIILLNEDG LPHLQLSEFY
KEGVKGTTDK EKDYVQEKMR SASWLIKSLY QRQRTLYKVV ESIIKYQRGF FEEGVSRLRP
LILKDIADDI GMHESTVSRI TTNKYVATPH GIVELKYFFN SALALNDGTE VGSESVKALI
KNLISEENPK EPLSDEKIGE ILKEKLQVNI ARRTVAKYRT AMGIPSSSKR KAVF
|
|---|
| |