| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1680 |
|---|
| Symbol | |
|---|
| ID | 3756678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 1730458 |
|---|
| End bp | 1731747 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637782560 |
|---|
| Product | thiamine biosynthesis protein ThiC |
|---|
| Protein accession | YP_388172 |
|---|
| Protein GI | 78356723 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
|---|
| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATTC TTGAAGCAAA CACCGCTCTC CGGAGCCTTC TCGACCAGCA CATTTCCATG
CTCGCGGAAA AAGAACATAT TTCCGCAGAG ACAATCCGTG CCGGTATAGA AAACGGCACT
ATGGTGCTGC TCGGTAACCC TTCACACGGC AATGTACTGC CTACGCTGGT CGGCCAGCCT
GCCGGTGTAA AGGTGAACGC CAACATCGGC ACGTCTCCTC TGAAAAACAG TGTGGCCTGC
GAAATGCGCA AGCTGCAGGT GGCCGAACAG GCCGGCGCGG ATACCGTCAT GGATCTTTCC
ATTGCGGGAG ATCTGGACGC CATCAGACGC GAAATGCTTT CGCAGACCAG ATTGCCTCTG
GGCACGGTAC CTATGTATTC CGTGGCTCAG CGGTATCTTG ATGCAGATCG CGATCCTGCT
GAAATGGATC CTGAAGAGCT TTTCGAAGAA ATCGAAAAGC AGGCCGGGCA GGGTGTCGAT
TTTATTACAG TGCACTGCGG GCTTACCCGT CGCGGAGCCG AACTGGCTAC CGACGGCAGC
CGTCTGCTGG GTATAGTTTC GCGGGGCGGT TCCATTCTTG CGCGCTGGAT GCTGCGTAAC
AACAAAGAAA ACCCTCTGCT TACCGGATTT GACCGTCTGA TCGACATCTG CCGCAGACAT
AACGTGACGT TTTCTCTGGG TGACGGTCTG CGCCCCGGCG CCGGTCATGA TGCGGGGGAC
GCGGCCCAGT ACGAGGAAGT CATGGTGCTG GGGCAGCTGG CCAAAAGAGC TCTTGCCGCC
GGTGCGCAGT GCATGATTGA AGGTCCCGGC CATGTGCCGT TCAATCAGGT ACGCAGCCAG
ATTCAGACTA TCAAGCGGAT GACTAACAAT GCCCCGTTGT ATGTGCTGGG GCCGCTGACC
ATTGATTCCT GCCCCGGCTA CGACCATATT GCAGGTGCCA TCGGCGGAGC CATTGCTGTG
GAGGCAGGGG TTGACTTCCT CTGCTATCTT ACTCCCGCCG AGCATCTGAC TTTGCCCACC
ATGGATGATG TCCATGCGGG CGTTGTGGCT TCACGCATCG CCGCACAGGC TGGTGAAGTT
GCTCTTGGCA GGGCTGCCGC GCTGGAACGC GAAGAGGGTA TTTCCCGCGC GCGTAAGGAC
CTCGACTGGG ATGCCATGAA AAAATATGCT CTGGATGCGC CTAAAATCGA TGAGCGTCGT
GGCGAGCATA AAGACGAGGA AGAGTGCGCC ATGTGCGGTA AGTTCTGCGC GGTGAAAATG
CTGCGCGAAG ACCCCATGGG CAAAATTTAG
|
|---|
| Protein sequence | MSILEANTAL RSLLDQHISM LAEKEHISAE TIRAGIENGT MVLLGNPSHG NVLPTLVGQP
AGVKVNANIG TSPLKNSVAC EMRKLQVAEQ AGADTVMDLS IAGDLDAIRR EMLSQTRLPL
GTVPMYSVAQ RYLDADRDPA EMDPEELFEE IEKQAGQGVD FITVHCGLTR RGAELATDGS
RLLGIVSRGG SILARWMLRN NKENPLLTGF DRLIDICRRH NVTFSLGDGL RPGAGHDAGD
AAQYEEVMVL GQLAKRALAA GAQCMIEGPG HVPFNQVRSQ IQTIKRMTNN APLYVLGPLT
IDSCPGYDHI AGAIGGAIAV EAGVDFLCYL TPAEHLTLPT MDDVHAGVVA SRIAAQAGEV
ALGRAAALER EEGISRARKD LDWDAMKKYA LDAPKIDERR GEHKDEEECA MCGKFCAVKM
LREDPMGKI
|
|---|
| |