Gene Dde_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_1550 
Symbol 
ID3755989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp1568503 
End bp1569786 
Gene Length1284 bp 
Protein Length427 aa 
Translation table11 
GC content57% 
IMG OID637782427 
ProductTRAP dicarboxylate transporter- DctM subunit 
Protein accessionYP_388042 
Protein GI78356593 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1593] TRAP-type C4-dicarboxylate transport system, large permease component 
TIGRFAM ID[TIGR00786] TRAP transporter, DctM subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.251016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCATTC TTTTGCTGCT TGTCTTTTTT GCCATGCTGG CATCGGGGCT GCCGCTGTTT 
GTGGCCATGC TGTGTACAGC ACTGGCCGGG TTTGCCTACA TCGGCGAGTC CGGTCAACTG
CGGCTGATGG TGCAGCAGTT TTATGGCGGC ATGGAACCTT TTTCCCTGCT GGCCATACCG
TACTTTATTC TGGTGGGCGA ACTGATGGGC TGCGCCGGAC TGACCAGCAG ACTGTTGCGT
TTTGCCGAGG CTCTTGTGGG ACACCTCAAG GGCGGACTGG GCTATGTGAC AGTGGTGGCC
AGCATCATTT TTGCCGGTGT CAACGGCTCT GCCGCGGCGG ATGCGTCCGC AGTAGGCTCC
ATCATGATTC CCGCCATGAA AAAAGGCGGA TACCCCGACT CGTATGCCGC GGGCCTTACT
GCCGGCAGTT CGCTTATCGG TCCCATCATT CCGCCGAGCA TTTTTATGAT TTTGTTCGGC
GCCATGACAA AGACGAATGT GGGCGGGCTG TTTATGGCGG GTGTGGTGCC GGGGTTGCTG
CTTGGTGTCG CTTTTATGGT CATGCACCGC ATCAGTGCCG CGCGGCTCAA CCTGCCTACG
GTCAATACGG CCTTTTCCAT GCCTGATCTC TGGAGGGCCA CCGGCGGAGC CATGGCTGCG
CTCATTGCTC CGGGTATCAT TATCGGCGGT ATCCTGTTCG GGTTCATGAC CCCCACCGAG
TCCGGTGCCA TAGCCAGTCT GTATGTGGTC ATCGTGGGCT TTGTCTGGAC ACGGCAGCTG
ACGGTGAAGG GCGTGCTGCT GGCGTTGTCG AACACGGTCC GGCTTACCAG TGTCATTTTT
GTGGTTATCG GGGCGGCGAC TATTGTCGGC TGGATTCTGT CTGCCGAAAA AGTACCGCAG
TCCATGGCTC CGGTGATCAT GAGTTATGCC TCGAGTCCTG AACAGGTTCT GCTGCTGATA
AGCCTGATTG TGTTTGTGGT GGGCATGTTC ATGGAAGAAA TTGCGGCTCT GGTGCTGCTT
ACTCCGGTGT TCGCGCCGCT GGCTGTGGCG GCGGGAATTG ATCCGTATCA TTTCGGCATC
GTGATGACAC TGAACATCAC CATTGCGCTT ATCACTCCGC CCATGGGAGC CTGCGTGTAC
ATCGTATCCT CCGTGGGCAA TGTGTCGCTG GAAAAAATGT TCAGGCACAT CTGGCCGTTT
GTTCTGGTGG CGCTGGCCTG TCAGCTGCTG CTGATTTTTG TTCCCGGGAT ATCTGTCTGG
CTGCCGCATA TGCTGGGCTA TTAA
 
Protein sequence
MSILLLLVFF AMLASGLPLF VAMLCTALAG FAYIGESGQL RLMVQQFYGG MEPFSLLAIP 
YFILVGELMG CAGLTSRLLR FAEALVGHLK GGLGYVTVVA SIIFAGVNGS AAADASAVGS
IMIPAMKKGG YPDSYAAGLT AGSSLIGPII PPSIFMILFG AMTKTNVGGL FMAGVVPGLL
LGVAFMVMHR ISAARLNLPT VNTAFSMPDL WRATGGAMAA LIAPGIIIGG ILFGFMTPTE
SGAIASLYVV IVGFVWTRQL TVKGVLLALS NTVRLTSVIF VVIGAATIVG WILSAEKVPQ
SMAPVIMSYA SSPEQVLLLI SLIVFVVGMF MEEIAALVLL TPVFAPLAVA AGIDPYHFGI
VMTLNITIAL ITPPMGACVY IVSSVGNVSL EKMFRHIWPF VLVALACQLL LIFVPGISVW
LPHMLGY