Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_1550 |
Symbol | |
ID | 3755989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 1568503 |
End bp | 1569786 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637782427 |
Product | TRAP dicarboxylate transporter- DctM subunit |
Protein accession | YP_388042 |
Protein GI | 78356593 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.251016 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCATTC TTTTGCTGCT TGTCTTTTTT GCCATGCTGG CATCGGGGCT GCCGCTGTTT GTGGCCATGC TGTGTACAGC ACTGGCCGGG TTTGCCTACA TCGGCGAGTC CGGTCAACTG CGGCTGATGG TGCAGCAGTT TTATGGCGGC ATGGAACCTT TTTCCCTGCT GGCCATACCG TACTTTATTC TGGTGGGCGA ACTGATGGGC TGCGCCGGAC TGACCAGCAG ACTGTTGCGT TTTGCCGAGG CTCTTGTGGG ACACCTCAAG GGCGGACTGG GCTATGTGAC AGTGGTGGCC AGCATCATTT TTGCCGGTGT CAACGGCTCT GCCGCGGCGG ATGCGTCCGC AGTAGGCTCC ATCATGATTC CCGCCATGAA AAAAGGCGGA TACCCCGACT CGTATGCCGC GGGCCTTACT GCCGGCAGTT CGCTTATCGG TCCCATCATT CCGCCGAGCA TTTTTATGAT TTTGTTCGGC GCCATGACAA AGACGAATGT GGGCGGGCTG TTTATGGCGG GTGTGGTGCC GGGGTTGCTG CTTGGTGTCG CTTTTATGGT CATGCACCGC ATCAGTGCCG CGCGGCTCAA CCTGCCTACG GTCAATACGG CCTTTTCCAT GCCTGATCTC TGGAGGGCCA CCGGCGGAGC CATGGCTGCG CTCATTGCTC CGGGTATCAT TATCGGCGGT ATCCTGTTCG GGTTCATGAC CCCCACCGAG TCCGGTGCCA TAGCCAGTCT GTATGTGGTC ATCGTGGGCT TTGTCTGGAC ACGGCAGCTG ACGGTGAAGG GCGTGCTGCT GGCGTTGTCG AACACGGTCC GGCTTACCAG TGTCATTTTT GTGGTTATCG GGGCGGCGAC TATTGTCGGC TGGATTCTGT CTGCCGAAAA AGTACCGCAG TCCATGGCTC CGGTGATCAT GAGTTATGCC TCGAGTCCTG AACAGGTTCT GCTGCTGATA AGCCTGATTG TGTTTGTGGT GGGCATGTTC ATGGAAGAAA TTGCGGCTCT GGTGCTGCTT ACTCCGGTGT TCGCGCCGCT GGCTGTGGCG GCGGGAATTG ATCCGTATCA TTTCGGCATC GTGATGACAC TGAACATCAC CATTGCGCTT ATCACTCCGC CCATGGGAGC CTGCGTGTAC ATCGTATCCT CCGTGGGCAA TGTGTCGCTG GAAAAAATGT TCAGGCACAT CTGGCCGTTT GTTCTGGTGG CGCTGGCCTG TCAGCTGCTG CTGATTTTTG TTCCCGGGAT ATCTGTCTGG CTGCCGCATA TGCTGGGCTA TTAA
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Protein sequence | MSILLLLVFF AMLASGLPLF VAMLCTALAG FAYIGESGQL RLMVQQFYGG MEPFSLLAIP YFILVGELMG CAGLTSRLLR FAEALVGHLK GGLGYVTVVA SIIFAGVNGS AAADASAVGS IMIPAMKKGG YPDSYAAGLT AGSSLIGPII PPSIFMILFG AMTKTNVGGL FMAGVVPGLL LGVAFMVMHR ISAARLNLPT VNTAFSMPDL WRATGGAMAA LIAPGIIIGG ILFGFMTPTE SGAIASLYVV IVGFVWTRQL TVKGVLLALS NTVRLTSVIF VVIGAATIVG WILSAEKVPQ SMAPVIMSYA SSPEQVLLLI SLIVFVVGMF MEEIAALVLL TPVFAPLAVA AGIDPYHFGI VMTLNITIAL ITPPMGACVY IVSSVGNVSL EKMFRHIWPF VLVALACQLL LIFVPGISVW LPHMLGY
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