Gene Dde_1447 details

Gene Information

• Locus tag: Dde_1447
• ID: 3756117
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfovibrio desulfuricans subsp. desulfuricans str. G20
• Kingdom: Bacteria
• Replicon accession: NC_007519
• Strand: -
• Start bp: 1471401
• End bp: 1473137
• Gene Length: 1737 bp
• Protein Length: 578 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637782325
• Product: pseudouridine synthase, RluD
• Protein accession: YP_387941
• Protein GI: 78356492
• COG category: [H] Coenzyme transport and metabolism; [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0237] Dephospho-CoA kinase; [COG0564] Pseudouridylate synthases, 23S RNA-specific
• TIGRFAM ID: [TIGR00005] pseudouridine synthase, RluA family; [TIGR00152] dephospho-CoA kinase

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCGCAT TTAAACTTTA TCCGGATATG TGTAGTATGG TGAAAGATTT TCGTCAAGGA 
CAACATGAAA AATTGACACA ACACACTGAA AATAAAAACA CTTCTTCCGG AAAAACCCTG 
CTTGACTGCA TGGTCTCCCC GCAGGCCGCG GGTGAACGTG CCGACAGGTT TATTGCCGCG 
GCGCTGGCCG GAGACGCCAT ATCGCGCGGA AAAATCCAGC GCGCCATAAG CGACGGACAG 
CTTCTGATTG ACAATACTGT CTGCACCAGC CCGAAGACAA AACTTAAAAG CGGACAGCAC 
ATTGTTTTCA GCATGGAAGC CCCTGCCGCC TGTGTCTCGC CCGAAGAAGG CGAGCTGGAG 
GTACTCTACC GCGATGCGCA CATGCTGGTA ATCAACAAGC CTGCCGGATT GACGGTACAC 
CCCGCCCCGA GTTGCCCCGA AGGCACACTG GTACACAGAT TACTGCACCA CTTTCCCGAA 
CTGGAGGCAC AGGAAGGATT TCGTCCGGGA ATCGTGCACA GAATAGACAA GGATACCAGC 
GGCCTGCTGT TGATCGCCCT GACGGAAAAG GCACGGCTGG CACTTTCCGA CGCTTTTGCC 
GGACGCCGGA TACACAAAGA ATATCTGGCA CTTGTAAAAG GCATTCCGGA AGGCGACAGC 
GGTGAAATTG ACGCACCCGT AGGCCGGCAT CCCACACATA AAACCCGCAT GGCCGTCGTA 
CGCGGCGGTC GCGAAGCCCT TTCCACATGG CGGGTGCTGC TCGCCGACCC CCATGGCGGT 
GGCGGAACAG GCTGGACGCT TGTGGCGGTG CGTATTCATA CCGGCCGGAC TCATCAGATA 
CGCGTCCACA TGCAGCATAC AGGACACCCG TTATGGGGCG ATGCACTTTA CGGCGGTATG 
CCCGGCAGAG AAGAACTTCA GACCACACCG GCTCTGGCGC AGACGGCAAC CCGCCAGATG 
CTGCACGCAT GGAAAATATC CTTCGACCAT CCGGTCACCG GAGCCCCCAT GCAGTTCACC 
CTGCCACCCC CTGCCGACTT CGGCACACTT ATCCGCGATC TGGGCTCGCG CTGCCAGCGT 
GTGGTCATCA CCGGCATGCC CGGCTGCGGC AAGTCTGCCG TGCTGGGGCT GCTGCGCGAC 
CGCGGCATAC CCGTATGGAG TGCCGACGCC TGTGTCGCGT CGCTCTACGC CGCAGGCGGC 
GACGCGTGGC ACGGCCTGAG GGGCAGGTTC GGAGACCGCT TTGTACCGGA CGAATCTTCT 
CCCGTGGACA AACAGGCCCT GCTAAAAGCC ATGCAGACCG ATGCGGCCAT ACGGCGCGAA 
GTGGAAGACA TAGTTCATCC GGCTGTACGC CATAATCTGG AACAATTCTG GCTGGCACAC 
ACCGGTGCCG CGCTGGCCGT GGCAGAAATA CCTCTTTTTC TTGAAACAGG CTGGAAAAAA 
GAAGCCGACG TGCTGGTGGG CATATTCACC CCGATGCACA TGCGGCAGCA GCGTCTGCGG 
GAAAAACGCG GATGGACCGA CGCAACCATA GCGTCCATGG ATGCATGGCA ATGGCCGGAA 
GCGGACAAAA TGCGCGCCTG CGGCATGATT CTGGACAATT CCGGTCCGGA GGCAGAACTG 
CCCCGCAAGA CGGCGGCGCT TGCCGCACAG CTGGCAGTAC TGCGCATGCA CAGACTGGAC 
AGACTGGAAG CCCGCGCCAG AACACTCTGG ACTGTTCCAC CCGGCGGGCG GAAGTGA 

 

Protein sequence

MFAFKLYPDM CSMVKDFRQG QHEKLTQHTE NKNTSSGKTL LDCMVSPQAA GERADRFIAA 
ALAGDAISRG KIQRAISDGQ LLIDNTVCTS PKTKLKSGQH IVFSMEAPAA CVSPEEGELE 
VLYRDAHMLV INKPAGLTVH PAPSCPEGTL VHRLLHHFPE LEAQEGFRPG IVHRIDKDTS 
GLLLIALTEK ARLALSDAFA GRRIHKEYLA LVKGIPEGDS GEIDAPVGRH PTHKTRMAVV 
RGGREALSTW RVLLADPHGG GGTGWTLVAV RIHTGRTHQI RVHMQHTGHP LWGDALYGGM 
PGREELQTTP ALAQTATRQM LHAWKISFDH PVTGAPMQFT LPPPADFGTL IRDLGSRCQR 
VVITGMPGCG KSAVLGLLRD RGIPVWSADA CVASLYAAGG DAWHGLRGRF GDRFVPDESS 
PVDKQALLKA MQTDAAIRRE VEDIVHPAVR HNLEQFWLAH TGAALAVAEI PLFLETGWKK 
EADVLVGIFT PMHMRQQRLR EKRGWTDATI ASMDAWQWPE ADKMRACGMI LDNSGPEAEL 
PRKTAALAAQ LAVLRMHRLD RLEARARTLW TVPPGGRK