| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1416 |
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| Symbol | |
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| ID | 3756125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007519 |
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| Strand | - |
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| Start bp | 1434909 |
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| End bp | 1439183 |
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| Gene Length | 4275 bp |
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| Protein Length | 1424 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637782294 |
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| Product | hypothetical protein |
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| Protein accession | YP_387910 |
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| Protein GI | 78356461 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | [TIGR03661] type 1 secretion C-terminal target domain (VC_A0849 subclass) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.259976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGACG TCCAAAGCAT GCATTCTGAA GCCCTTACGC TTTCAGCCCC TCCGGCTGCC
ACATCAGTTA CCGTCAACCT TTCCGGCTCC GAGCTTCTGC TTCCCCTCTT TTCACTTGCC
GATGTGACCA TAGTTCGCAA CGGCGCAGAT CTCGTCATCC GTTTTCCAGA CGGAGGCACA
CTGGTACTGC AGCATTTTGC CGCTGCAGAC GGGCAGTTGC CTGACGTACA GCTGGCAGAC
GGTTCCATTA TTCCCGGCGA ATCCATTCTG AACGCGCTTG CCGCCACTCC TGAACTGGAA
ACAGCCGCAG GACCGGCTTC TCCCAGCGGG GGCACCGGTG AATACGCCGA CAATGCAGGA
ACCATTGCCG AAGGACTGGA AGCTCTGGGA TCCGTCGACA GCGGACGCAG TCAGGCTTTG
AATGATCCGG GAACACAAGC AGACTCCGCC ACGCCTGCAG CTGTCTCGGC CGGTGGCCGT
CAGAGCACTT CAGCAGACGC TTCTGCCGAC ATCTACGGCA CCGAAGGCGA CGACACGCTT
ACGGGCACCC CGTCGGCAGA CCGCATACAC GGGCTGGGAG GAAATGATCT GCTGGCCGGA
ACCGGCGGAA ACGACACAAT TTTCGGCAAC GAGGGTGACG ATACGCTTAT CGGCGGCAGC
GGCGATGACA TGCTGGACGG CGGAAGCGGT ATCGACACCG CATCCTATGC CGGCGCAGGC
TCCGGCGTTC AGGCCGACTT ATCCGCCGGC ACCGCCACAG GGACAACCAC GGGCAACGAC
ACCCTTGACG GTATCGAAAA TCTGACCGGC AGCGCATTCA ACGACACCCT GACGGGCAGT
GATGAAAATA ACAGTCTGCT GGGCGACGCC GGTGATGACA GGCTGTTCGG CGGTGAAGGC
AACGACACCC TTGACGGCGG CGCCGATAAC GATTTTCTCA GCGGCGGTGC AGGCAATGAC
CTGTTGCACG GCGGTGCAGG TAACGACGAA CTGCGCGGCG GCGGCGGTGA CGACGACCTG
TACGGCGATG CAGGGGATGA CACACTGTAT GGCGGAGCAG GCAGCGATCT GCTGCAGGGC
GGTGAAGGCG ACGATGTGCT TCACGGCGGC AGCGGGGTTG ATTATCTGAA CGGCGGCGCA
GGCAATGACA CCCTGAACGG CGGCTCCGGC GACGATACCT TGTACGGCGG TACCGGCGAC
GACCTGATAC GGGGCGGAGC CGACAACGAC ACCCTGTACG GTGAAGACGG CAACGACACG
CTGCGCGGCA ATCAGGGCAA CGACGACCTG TACGGCGACG CCGGTGATGA CAGACTGTTC
GGCGGTGAAG GCAACGACAC CCTTGACGGC GGTGCCGATA ACGATTTTCT CAGCGGCGGC
GCAGGCAATG ACCTGTTGCA CGGCGGTGCA GGTAACGACA CGCTCACCGG CGGCTCCGGC
AACGACCTGC TGGACGGCGG CGCAGGAAAT GACACAGTTG TCTTCCGGGG AGCTTCCGGA
CAGTATACCA TCACCCGCAC GCAAGACGGC GGATACCGCA TTGAAGACAA TGTGGAAGGA
AGGGACGGCA TAACCACCGT TACCAATGTG GAGCAGCTGC AATTCAAAGA CGGGACATTC
ACTCCCGAAG ATGTCGCAGC CCCTCTTTCC ATCACGCTGA ACAATCAGAA CACTCCCGAT
CCGGACTGGC ACTCTGCAGA AGCCAACATG GACGCCTCAT ACAGCGGCAC CCACAACGCA
GGGGCGGAAC TGGGCGGGCG CGGCATGGTC ACAGTATCAA CCGGCAACAC GGGCACAGAT
GTCACGCTTG ATTCCGGCTG GAACAGTGTC AAAAGCGTAA AGGCCGAAAG TGCGGAGGCA
GCCACACTGC ACCTTTCCGG TTTTGTACAT GCCGATGTAA CACTGGGCAG CGGTGACGAC
AGCCATGTCA CACTGGATAA CATCAAGCGG GGCACCATTA CCACCGGCGA CGGCAACGAC
ACAGTCAATG CTTCCGTGAC CACCAACGAC CGCAGCGCCG GCGGCAACGA CCGCTGGAAC
CATCTTGACT TCAACACGGG TGAAGGTGCC GACACCATTA CGCTGACCAC CGGTGACCAG
CACAGCCATC AGAACAGGGC CACCCTCCTC ACCGTGGACA GCGGCTCCGG TGACGACACC
GTAACCGTCA ACATTGATGC GAAATCCGTC ACTGCGAAAA CCGGCACGGG CGACGATACC
GTCACCCTGT CGGGCAGGTT CGGGCAAGTC GACGTTGCAA CCGGCGAAGG TGCCGACCAC
GTTACTGCGC AAGGCACCAG CCAGAACATG CACATTGCCA CCGGTCAGGG AGCCGACCAC
ATAACCGTGT CCGGCAGCCA TACGGCAACC ACCGTGCAGG CAGGTTCAGG TGCCGATCAT
ATCACCATAA GCGGCTCCAC CGGCAATCTT GACGTATCAG CAGGAGACGG GGCCAACCAT
GTGACTGTCA GCGGGGCACA CGGTAACACG CAGATAGACA CAGGCACCAA TGCCGACACC
GTATCGGTAA GCGGTACCAG CACCAGACTG GACATTAACA CGGGCGGCGG CAGCGATACC
GTCACACTGA GCGGCAGCCA CACAGATGTA TCCGTCAGCA CCGGCGCCGG TAAAGACCAT
GTCACCATAA ACGGGTTTGC CGGTGCGGCC GTGCTCGACG GCGGTTCCGG ATACGACACG
CTCAGCCTTG CAGGCAGCAG AGCCGACTAC TCCTTTGAAA AACACGGCGA CAGCCTGCTG
ATAACTGACA CGTACGGCAA CTCTCTGGAT GCCACCAGCT TTGAATCATT CACCTTTGCA
GACGGCGGCT ATTCCGCAGA CCAGCTGACC AATACCGCGC CGGTCATCAC GGATGCACCG
CAGACCGTCA CTCTTGATCA GGCAGAGCTT GCAGCGTTCA GCATTGTGGC GCATACCCGT
GCGGCAGATG CCGACGGCGA TACGCTGCGT TACAGTATAG CCTCGCCCGA AGATGGCGCC
GGCAACCCGC TTTTTGCCGT GCACACCAGC GATGCGGCAG ACGGAACACA CCACGCGGGT
GACATATACC TTACCGAAGC GGGCGCACAC TACTACCGCA CACACGGCGG CGACAGCTCG
CTCTCTCTCA CCGTGCATGA CGGCTATGAC TCCGACACTG CGCAGGTGGA CATCAGCTTC
ACCGACTCCA CCAACACTGT TCATGCTGCG GTATCGCAGG GACTCACCGG GGAGCTGACT
CCCGGCAGTG ATTTAGTGGT ATCAACGCAC ATCAATGCGG AGTCCGGCAG CTATGAAAGC
TCTCTGGGCA TTTACTTTGC CACGGCCGAC GGCACACCCA TTTCCGGCAT AATTGTGGAC
GCCCGTGCCC AGACCGGCGA CGCCGGTACA ATCACCATCG CCGCGCAGGA CATTCCCGCA
GGTGCTGAAA AGTTCGGCTA CTTCATCGCC CCCGATGCTT ACGACTCCAA CGGAGAGACA
AGCTTCAGCT GGCAGCACGG CTTTGAATTC CAATCTGACA TCACCGACGG AATGAAGGTA
TTCTTCCAGA ATAGCGGAAG TGCGGACGCC CCCAGATGGT CAGCCCATAC GGAAGCTGGA
GAGAAACTGA CACTCGGCGA TCCTCTGCAG CATGAAAACA TCTACTTCAG CGATGCGCAG
CTCAACGGCG GAAATCAGCA TGCCACGCTA CATACCGACG GCACCATAAG CTGGGAAGAT
TCGCGCCATT GGATCAACAA CTTCGGCAAC GATGATATTT TTGTCCAGCA TACCACCAAC
CAGTCCGGCG CTCACGGTTC CGACCATGCA GACATGCTTA TCGGCGGCAC CCTGCCGGAT
AATCTTGTGG GCGGCGCAGG TAACGACATT CTTTTCGGTA ACGAAGGACA TGACGTGCTG
AACGGCGGTG CAGGCAATGA TATCCTGACC GGCGGGCAGG GAGCAGATAC CTTTGTGTTT
ACTGCACAGG GGCTGCACGA CGGCCAGTCG GCCATCGATC ACATCACCGA CTTTAACGTG
AATGAAGGGG ATGTGCTGGA CATCAGCGAC CTGCTGGACG GATACGGCCA CGGTGGAGCC
ACTGTCAGTC TGGGGGCTGA TCCGTACAAT GAAAACAGCA GTATGCTTAC TATCACCCCG
GCACAGGGCG ACGGCAGCCA GCGCATAGTG CTGGACGGTG TAAGTCTGGA CTCACTGGGC
GGCAGCACAG GGCACGACAG CCCGGAAGCC ATACTGCAGG CACTGATCAA TCAACACAAG
ATAATTGACG CGTAA
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| Protein sequence | MADVQSMHSE ALTLSAPPAA TSVTVNLSGS ELLLPLFSLA DVTIVRNGAD LVIRFPDGGT
LVLQHFAAAD GQLPDVQLAD GSIIPGESIL NALAATPELE TAAGPASPSG GTGEYADNAG
TIAEGLEALG SVDSGRSQAL NDPGTQADSA TPAAVSAGGR QSTSADASAD IYGTEGDDTL
TGTPSADRIH GLGGNDLLAG TGGNDTIFGN EGDDTLIGGS GDDMLDGGSG IDTASYAGAG
SGVQADLSAG TATGTTTGND TLDGIENLTG SAFNDTLTGS DENNSLLGDA GDDRLFGGEG
NDTLDGGADN DFLSGGAGND LLHGGAGNDE LRGGGGDDDL YGDAGDDTLY GGAGSDLLQG
GEGDDVLHGG SGVDYLNGGA GNDTLNGGSG DDTLYGGTGD DLIRGGADND TLYGEDGNDT
LRGNQGNDDL YGDAGDDRLF GGEGNDTLDG GADNDFLSGG AGNDLLHGGA GNDTLTGGSG
NDLLDGGAGN DTVVFRGASG QYTITRTQDG GYRIEDNVEG RDGITTVTNV EQLQFKDGTF
TPEDVAAPLS ITLNNQNTPD PDWHSAEANM DASYSGTHNA GAELGGRGMV TVSTGNTGTD
VTLDSGWNSV KSVKAESAEA ATLHLSGFVH ADVTLGSGDD SHVTLDNIKR GTITTGDGND
TVNASVTTND RSAGGNDRWN HLDFNTGEGA DTITLTTGDQ HSHQNRATLL TVDSGSGDDT
VTVNIDAKSV TAKTGTGDDT VTLSGRFGQV DVATGEGADH VTAQGTSQNM HIATGQGADH
ITVSGSHTAT TVQAGSGADH ITISGSTGNL DVSAGDGANH VTVSGAHGNT QIDTGTNADT
VSVSGTSTRL DINTGGGSDT VTLSGSHTDV SVSTGAGKDH VTINGFAGAA VLDGGSGYDT
LSLAGSRADY SFEKHGDSLL ITDTYGNSLD ATSFESFTFA DGGYSADQLT NTAPVITDAP
QTVTLDQAEL AAFSIVAHTR AADADGDTLR YSIASPEDGA GNPLFAVHTS DAADGTHHAG
DIYLTEAGAH YYRTHGGDSS LSLTVHDGYD SDTAQVDISF TDSTNTVHAA VSQGLTGELT
PGSDLVVSTH INAESGSYES SLGIYFATAD GTPISGIIVD ARAQTGDAGT ITIAAQDIPA
GAEKFGYFIA PDAYDSNGET SFSWQHGFEF QSDITDGMKV FFQNSGSADA PRWSAHTEAG
EKLTLGDPLQ HENIYFSDAQ LNGGNQHATL HTDGTISWED SRHWINNFGN DDIFVQHTTN
QSGAHGSDHA DMLIGGTLPD NLVGGAGNDI LFGNEGHDVL NGGAGNDILT GGQGADTFVF
TAQGLHDGQS AIDHITDFNV NEGDVLDISD LLDGYGHGGA TVSLGADPYN ENSSMLTITP
AQGDGSQRIV LDGVSLDSLG GSTGHDSPEA ILQALINQHK IIDA
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