| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dde_1138 |
|---|
| Symbol | |
|---|
| ID | 3755162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007519 |
|---|
| Strand | + |
|---|
| Start bp | 1167772 |
|---|
| End bp | 1168566 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637782008 |
|---|
| Product | 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase |
|---|
| Protein accession | YP_387634 |
|---|
| Protein GI | 78356185 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000000941177 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGTGC TGAGGGTACG ATATAACGGC CATTCCTTTT ACGGCAGGCT GGACGGCAAT
CATGTGCATT GTCTCAATCC GCAGCTGGGG CTTAACGACC CCATAGCTCT TGAGGATATT
GCAGTGCTGC CTGTGGTCAC TCCCTCAAAG ATCGTCTGTG TGGGGATGAA TTTTCGCGAC
CATGCGGAAG AAATAGGCTT TCCCGTGCCG GAAGAACCGG TCTTTTTTCT CAAGCCCTCC
AGTGCCGTGA TCGGCAGCGG ACAGCCTGTG GTGCTGCCTG CCGAATCGGG GCGGGTGGAG
CATGAAGCGG AACTGGGGGT GGTTATCGGG CGTGCCGCAC GCAATATAAC TCCCGAGGAT
GTTCCGGCGC ATGTTTTCGG CTATACCTGC GCCAACGATG TGACGGCGCG CGACCTGCAG
TCCCGTGACG GTCTTTTCGG CCGGTGCAAG GGGTTTGACA CATTTGCTCC CGTGGGGCCG
TGGATAGAGA CCGAAGTGCC CGACCTTTCT TCGCTGGGCA TCAGAGCCAT GGTGAATGGT
GAACTGAGAC AGCAGGGCAG CACCGCGGAT ATGCTTTTTT CGCCGCACGA GATAGTGGCG
GCCGTTTCCC GCGTGATGAC GCTGCTGCCC GGTGATCTGA TACTGACGGG AACCCCCGCC
GGTGTGGGAC CGCTGGAAGA CGGCGACGAG GTGCGCGTGG AGATTGACGG CGTAGGACTG
CTCATCAACC CCGTGCTGCG GGAACCTTCC GGCAGCGGGC AGGAAGGGCC GGAGTCGGAG
CCGCCTGTCC AGTGA
|
|---|
| Protein sequence | MRVLRVRYNG HSFYGRLDGN HVHCLNPQLG LNDPIALEDI AVLPVVTPSK IVCVGMNFRD
HAEEIGFPVP EEPVFFLKPS SAVIGSGQPV VLPAESGRVE HEAELGVVIG RAARNITPED
VPAHVFGYTC ANDVTARDLQ SRDGLFGRCK GFDTFAPVGP WIETEVPDLS SLGIRAMVNG
ELRQQGSTAD MLFSPHEIVA AVSRVMTLLP GDLILTGTPA GVGPLEDGDE VRVEIDGVGL
LINPVLREPS GSGQEGPESE PPVQ
|
|---|
| |