Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dde_0906 |
Symbol | |
ID | 3755634 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 |
Kingdom | Bacteria |
Replicon accession | NC_007519 |
Strand | + |
Start bp | 929969 |
End bp | 932191 |
Gene Length | 2223 bp |
Protein Length | 740 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637781773 |
Product | ATP-dependent DNA helicase RecD/TraA |
Protein accession | YP_387402 |
Protein GI | 78355953 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.618422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAAGAA AAACAAACTC CCCGGCAAAA CTCCGGGGAA GAATAGAGAG AGTTTATTAT GCCGGGCCAA AGTTTTCCGC AGGCCGTTTG CTCACCGCCA CAGGAGAGGA AATCCAGTTT GCCGGAAATC TGTTTGCCCG TGAAAATCAG CCCGTGGTCC TTTTGGGGAC GTGGGCCACC CATCCGAAAT ATGGTCGCCA GTTCAAGGTC GATGCCATGG AGCACGATCT TGATCTGAAC CCGGAAGGAT TGATTCACTA TCTGGCCAAT CACCCTGACA TCAAAGGGAT TGGTCCTGCC AAAGCCCGCC TTATCGTTGA AGAGTTCGGC GATTCTTTCG AGGAGACCCT GATTGAATCC CCGGAGCTCA TCGCATCAAA AGCCAGAATT TCCCTCGATG CCGCTAATCG TCTTAAGGAT GAATGGTGTA AAAACCGCAG CGTCAATGCC GTCCTGGCAT GGCTCTCCGC CTTTGGGTTG ACCCACCATC AGGTAACCAC GCTGGTCGAT AAGCTGGGCG GGAACTGTCT GGAAATCCTC AAAGCCGATC CTTACATCCT CATCCGGGAA CTGCGTGGAT TCGGCTTCAA GAAAGTCGAC AAGATTGCCC GCAAACTGGG TACGCCCAAA GACCACACCC CAAGAATCCG TGCCGGTATC CAGTACTGCA TGCACGAGGC GCTGGATCAG GGAAACTGCT GGGTCGAATA CGAGGACCTA GTTGATCAGG CCAATCTGCT GCTGGTGATG GATAATCTGG ACAGCCGCAT CCGTATCGAA GCCTCGCTGG ACAATCTGAT CAGTGAAAGA CTGCTTTCCT GTGAATCACA CGCGGGACGT TTTCTGGTGG CGCTTTCCGA TATCCTGAAA ATGGAACAGG ATATCGCCGC CATTTTCACC AAGGCGGATG CCTCGAACCC TCATTTCAAA TCGACCCGCA ATCTACAGAA GCTGATTCTT CGTCAGGCGG AAACGCTCAA TGAAAAGCAG CTCGAAGCGG TTCACTCTGC TTTGCAGCAC TCCATCAGTC TGATATCCGG TGGAGCCGGA TCGGGAAAAA GCTACACCGT ATCGGTCATC AACGCGGTAT GTGAAGAGTG CGATCTGGAA GTGGTTCTTT CCGCTCCGAC AGGCAAAGCG GCCAAAAGGC TCGAGGAAGT GAGCGGTCGC ACCGGAACCA CAATCCATCG ACTGCTTGGC TATGACGGCA AGTCCTTTTC AAAGGACAGT AACAATCCCA TCGATGCCGA CATCCTGATC ATCGATGAGT TTTCCATGGT GGATGTTTCT CTGGCATGGC ACCTTTTCAA TGCGGTGGAC TTTGCCAGAA CGGCCATTGT CATTGTGGGA GACCATAACC AGCTACCGCC GGTCGGACCG GGAAATATCC TTCGGGATCT GATTCACTCG AATGCCATCC CCACGGTCAT TCTGGATAAG GTGGTCAGGC AGGCCGGTGT GTTGAAGGAA AACAGCACCG CCATTCTCAA AGGCGAAGTT AGGAAAACCA GTGATGCCAG TACACAGGGC TGCCGGGATT GGTATCTGGC GGATCAGTTC ACCGACCCGG GTGCTGCTCG AAATTTCCTG CTGGATCTCT TTGACAAGCG GCTCGATGCC CTTGGATTTG ATCTAATCAA GGATGTGCAG GTGTTGACTC CAACGCACAA GGGGCCGCTG GGAACCAAGT CACTCAATGA AGATTTGCAG CGGCTTATCC AAAAGCGTCT CTGGAATGTG AGCGTTCCGG AAACGCAACT GGGTCGCCGG TCGCCATTTT TGAAACATGA CAAGGTCATT CAGACCCGCA ACAACTACGA CCTGAACGTC ATGAACGGTG CCATCGGTCA TGTGGTCGAT GTGCTGCCCA ACGGCACGCT GCTGATTGAT TTTGAGGGTG TGGCAGTTGA GATTGAAAAA GGTTCACCGA ACCTTCAGGA CATCCAGCTG GCCTATGCGC TGACAATCCA CAAAACCCAG GGATCGGAAT TTCCTTGCGC TGTTGTGGTG GTCCATAAGG CGCACTCGTT CATGCATCAT CGCAACCTGC TGTACACCGG TGTCACCCGT GCCCGCAAGA CTGCGATTGT ACTCGGTGAC CGCTGGGGCA TCCGCAATTG CGCCAAGAAA TGTCAGGTGG ATGACCGCAA GACCTTTCTT TCCATTCTGT TGAACAATTT GAATTGCCCT GAAGAGCAGT CAGCTTGTGC GGGGGCATTA TGA
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Protein sequence | MPRKTNSPAK LRGRIERVYY AGPKFSAGRL LTATGEEIQF AGNLFARENQ PVVLLGTWAT HPKYGRQFKV DAMEHDLDLN PEGLIHYLAN HPDIKGIGPA KARLIVEEFG DSFEETLIES PELIASKARI SLDAANRLKD EWCKNRSVNA VLAWLSAFGL THHQVTTLVD KLGGNCLEIL KADPYILIRE LRGFGFKKVD KIARKLGTPK DHTPRIRAGI QYCMHEALDQ GNCWVEYEDL VDQANLLLVM DNLDSRIRIE ASLDNLISER LLSCESHAGR FLVALSDILK MEQDIAAIFT KADASNPHFK STRNLQKLIL RQAETLNEKQ LEAVHSALQH SISLISGGAG SGKSYTVSVI NAVCEECDLE VVLSAPTGKA AKRLEEVSGR TGTTIHRLLG YDGKSFSKDS NNPIDADILI IDEFSMVDVS LAWHLFNAVD FARTAIVIVG DHNQLPPVGP GNILRDLIHS NAIPTVILDK VVRQAGVLKE NSTAILKGEV RKTSDASTQG CRDWYLADQF TDPGAARNFL LDLFDKRLDA LGFDLIKDVQ VLTPTHKGPL GTKSLNEDLQ RLIQKRLWNV SVPETQLGRR SPFLKHDKVI QTRNNYDLNV MNGAIGHVVD VLPNGTLLID FEGVAVEIEK GSPNLQDIQL AYALTIHKTQ GSEFPCAVVV VHKAHSFMHH RNLLYTGVTR ARKTAIVLGD RWGIRNCAKK CQVDDRKTFL SILLNNLNCP EEQSACAGAL
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