Gene Dde_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0906 
Symbol 
ID3755634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand
Start bp929969 
End bp932191 
Gene Length2223 bp 
Protein Length740 aa 
Translation table11 
GC content53% 
IMG OID637781773 
ProductATP-dependent DNA helicase RecD/TraA 
Protein accessionYP_387402 
Protein GI78355953 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.618422 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAGAA AAACAAACTC CCCGGCAAAA CTCCGGGGAA GAATAGAGAG AGTTTATTAT 
GCCGGGCCAA AGTTTTCCGC AGGCCGTTTG CTCACCGCCA CAGGAGAGGA AATCCAGTTT
GCCGGAAATC TGTTTGCCCG TGAAAATCAG CCCGTGGTCC TTTTGGGGAC GTGGGCCACC
CATCCGAAAT ATGGTCGCCA GTTCAAGGTC GATGCCATGG AGCACGATCT TGATCTGAAC
CCGGAAGGAT TGATTCACTA TCTGGCCAAT CACCCTGACA TCAAAGGGAT TGGTCCTGCC
AAAGCCCGCC TTATCGTTGA AGAGTTCGGC GATTCTTTCG AGGAGACCCT GATTGAATCC
CCGGAGCTCA TCGCATCAAA AGCCAGAATT TCCCTCGATG CCGCTAATCG TCTTAAGGAT
GAATGGTGTA AAAACCGCAG CGTCAATGCC GTCCTGGCAT GGCTCTCCGC CTTTGGGTTG
ACCCACCATC AGGTAACCAC GCTGGTCGAT AAGCTGGGCG GGAACTGTCT GGAAATCCTC
AAAGCCGATC CTTACATCCT CATCCGGGAA CTGCGTGGAT TCGGCTTCAA GAAAGTCGAC
AAGATTGCCC GCAAACTGGG TACGCCCAAA GACCACACCC CAAGAATCCG TGCCGGTATC
CAGTACTGCA TGCACGAGGC GCTGGATCAG GGAAACTGCT GGGTCGAATA CGAGGACCTA
GTTGATCAGG CCAATCTGCT GCTGGTGATG GATAATCTGG ACAGCCGCAT CCGTATCGAA
GCCTCGCTGG ACAATCTGAT CAGTGAAAGA CTGCTTTCCT GTGAATCACA CGCGGGACGT
TTTCTGGTGG CGCTTTCCGA TATCCTGAAA ATGGAACAGG ATATCGCCGC CATTTTCACC
AAGGCGGATG CCTCGAACCC TCATTTCAAA TCGACCCGCA ATCTACAGAA GCTGATTCTT
CGTCAGGCGG AAACGCTCAA TGAAAAGCAG CTCGAAGCGG TTCACTCTGC TTTGCAGCAC
TCCATCAGTC TGATATCCGG TGGAGCCGGA TCGGGAAAAA GCTACACCGT ATCGGTCATC
AACGCGGTAT GTGAAGAGTG CGATCTGGAA GTGGTTCTTT CCGCTCCGAC AGGCAAAGCG
GCCAAAAGGC TCGAGGAAGT GAGCGGTCGC ACCGGAACCA CAATCCATCG ACTGCTTGGC
TATGACGGCA AGTCCTTTTC AAAGGACAGT AACAATCCCA TCGATGCCGA CATCCTGATC
ATCGATGAGT TTTCCATGGT GGATGTTTCT CTGGCATGGC ACCTTTTCAA TGCGGTGGAC
TTTGCCAGAA CGGCCATTGT CATTGTGGGA GACCATAACC AGCTACCGCC GGTCGGACCG
GGAAATATCC TTCGGGATCT GATTCACTCG AATGCCATCC CCACGGTCAT TCTGGATAAG
GTGGTCAGGC AGGCCGGTGT GTTGAAGGAA AACAGCACCG CCATTCTCAA AGGCGAAGTT
AGGAAAACCA GTGATGCCAG TACACAGGGC TGCCGGGATT GGTATCTGGC GGATCAGTTC
ACCGACCCGG GTGCTGCTCG AAATTTCCTG CTGGATCTCT TTGACAAGCG GCTCGATGCC
CTTGGATTTG ATCTAATCAA GGATGTGCAG GTGTTGACTC CAACGCACAA GGGGCCGCTG
GGAACCAAGT CACTCAATGA AGATTTGCAG CGGCTTATCC AAAAGCGTCT CTGGAATGTG
AGCGTTCCGG AAACGCAACT GGGTCGCCGG TCGCCATTTT TGAAACATGA CAAGGTCATT
CAGACCCGCA ACAACTACGA CCTGAACGTC ATGAACGGTG CCATCGGTCA TGTGGTCGAT
GTGCTGCCCA ACGGCACGCT GCTGATTGAT TTTGAGGGTG TGGCAGTTGA GATTGAAAAA
GGTTCACCGA ACCTTCAGGA CATCCAGCTG GCCTATGCGC TGACAATCCA CAAAACCCAG
GGATCGGAAT TTCCTTGCGC TGTTGTGGTG GTCCATAAGG CGCACTCGTT CATGCATCAT
CGCAACCTGC TGTACACCGG TGTCACCCGT GCCCGCAAGA CTGCGATTGT ACTCGGTGAC
CGCTGGGGCA TCCGCAATTG CGCCAAGAAA TGTCAGGTGG ATGACCGCAA GACCTTTCTT
TCCATTCTGT TGAACAATTT GAATTGCCCT GAAGAGCAGT CAGCTTGTGC GGGGGCATTA
TGA
 
Protein sequence
MPRKTNSPAK LRGRIERVYY AGPKFSAGRL LTATGEEIQF AGNLFARENQ PVVLLGTWAT 
HPKYGRQFKV DAMEHDLDLN PEGLIHYLAN HPDIKGIGPA KARLIVEEFG DSFEETLIES
PELIASKARI SLDAANRLKD EWCKNRSVNA VLAWLSAFGL THHQVTTLVD KLGGNCLEIL
KADPYILIRE LRGFGFKKVD KIARKLGTPK DHTPRIRAGI QYCMHEALDQ GNCWVEYEDL
VDQANLLLVM DNLDSRIRIE ASLDNLISER LLSCESHAGR FLVALSDILK MEQDIAAIFT
KADASNPHFK STRNLQKLIL RQAETLNEKQ LEAVHSALQH SISLISGGAG SGKSYTVSVI
NAVCEECDLE VVLSAPTGKA AKRLEEVSGR TGTTIHRLLG YDGKSFSKDS NNPIDADILI
IDEFSMVDVS LAWHLFNAVD FARTAIVIVG DHNQLPPVGP GNILRDLIHS NAIPTVILDK
VVRQAGVLKE NSTAILKGEV RKTSDASTQG CRDWYLADQF TDPGAARNFL LDLFDKRLDA
LGFDLIKDVQ VLTPTHKGPL GTKSLNEDLQ RLIQKRLWNV SVPETQLGRR SPFLKHDKVI
QTRNNYDLNV MNGAIGHVVD VLPNGTLLID FEGVAVEIEK GSPNLQDIQL AYALTIHKTQ
GSEFPCAVVV VHKAHSFMHH RNLLYTGVTR ARKTAIVLGD RWGIRNCAKK CQVDDRKTFL
SILLNNLNCP EEQSACAGAL