Gene Dde_0867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDde_0867 
Symbol 
ID3755667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. G20 
KingdomBacteria 
Replicon accessionNC_007519 
Strand+ 
Start bp895487 
End bp896425 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content49% 
IMG OID637781732 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_387363 
Protein GI78355914 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.711393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGTT TTTACAGGGA ATTATTAGAT ACACTTACCG ACGGTATTTA TTTTGTCACT 
TCCTCAGGTA AGATTACATA CTGGAATAAA TCTGCAGAGC GATTGAGTGG CTATGCTGCC 
AGCGAAGTAG TGGGAAAGAG CTGCGGTGAT AATGTGCTGC GACACGTGGA TGACTGCGGG 
ACTCCTCTGT GTCTTACCGG ATGCCCTCTG GCAGCCACTC TCAGAGATAG CAAGATTCGC 
GAGGCCCGGG TGTATATGCA TCATAAACAG GGATACAGGG TGCCGGTGCT CGTGCGTACT 
TTTCCTATGG CTGATGCACA GGGAAACTCC ATAGGCGCGG TGGAAGTTTT TACTGATGAC 
AGCAAAAATA TTAATTTTAA AAAAGAGATG GAAGAGCTCA GGCGGGAAGT CCTGACCGAT 
CCCCTGACAG AGGTTGGAAA CCGTCGTTAC GCAGAGATAA TTCTTGAGCG CATGCAGGTC 
AGTATGAATG ATGTCGGTTC GCCGTATGCC GTTATCTTTG TTGATATTGA TTTGTTTAAA 
GATGTTAATG ATACATGGGG GCACATTGTT GGTGACAATG TTTTGAAAAT GGTTGCGAAA 
ACCATTGAAT CCTCTTTGCG GCCCCTTGAT GCGGTTTGCA GGTGGGGTGG CGAGGAATTT 
ATAATCTGCG TGCCCGGTGC CACAAAAGAC GGAGTTATGC AGCTTATGGA GCGGTTGCGG 
ATGCTAGTTC AGGAATCGTG GATTATGCAT GAACAGCATA AAATAGCGGT GACCGCTTCC 
TTCGGGGCTG CAATTTGCTC ACAGGGAGAG TCTTCCGAGT CTGTGGCGCA ACGGGCTGAC 
GAGCAGCTTT ATCTTAGCAA AAATACAGGA CGGAACTGTG TGCATCTTGA CGGAGTGCGA 
GGTGAACAAT GCTCCCGTCC CTCCTGCCGT TGTGCATGA
 
Protein sequence
MERFYRELLD TLTDGIYFVT SSGKITYWNK SAERLSGYAA SEVVGKSCGD NVLRHVDDCG 
TPLCLTGCPL AATLRDSKIR EARVYMHHKQ GYRVPVLVRT FPMADAQGNS IGAVEVFTDD 
SKNINFKKEM EELRREVLTD PLTEVGNRRY AEIILERMQV SMNDVGSPYA VIFVDIDLFK 
DVNDTWGHIV GDNVLKMVAK TIESSLRPLD AVCRWGGEEF IICVPGATKD GVMQLMERLR 
MLVQESWIMH EQHKIAVTAS FGAAICSQGE SSESVAQRAD EQLYLSKNTG RNCVHLDGVR 
GEQCSRPSCR CA